View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16437_low_5 (Length: 384)
Name: NF16437_low_5
Description: NF16437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16437_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 29235304 - 29235229
Alignment:
| Q |
4 |
tcattgattggaatgctacaaccatcttcaataatatctcatagttcttcataaagatctatgacatgactataca |
79 |
Q |
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| T |
29235304 |
tcattgattggaatgctgcaaccatcttcaataatataccatagttcttcataaagatctatgacatgactataca |
29235229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 29348603 - 29348528
Alignment:
| Q |
4 |
tcattgattggaatgctacaaccatcttcaataatatctcatagttcttcataaagatctatgacatgactataca |
79 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29348603 |
tcattgattggaatgctgcaaccatcttcaataatataccatagttcttcataaagatctatgacatgactataca |
29348528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 16800932 - 16800867
Alignment:
| Q |
14 |
gaatgctacaaccatcttcaataatatctcatagttcttcataaagatctatgacatgactataca |
79 |
Q |
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|||||||| |||||||||| || ||||||||||||||||||| |||| |||| |||||||||||| |
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| T |
16800932 |
gaatgctaaaaccatcttcgattatatctcatagttcttcatcaagaactatatcatgactataca |
16800867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 18085561 - 18085487
Alignment:
| Q |
5 |
cattgattggaatgctacaaccatcttcaataatatctcatagttcttcataaagatctatgacatgactataca |
79 |
Q |
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|||||| ||||||||||||||||| |||||| ||| | ||||||||||||| |||| ||||||||||||||||| |
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| T |
18085561 |
cattgactggaatgctacaaccatattcaattataccccatagttcttcatcaagagttatgacatgactataca |
18085487 |
T |
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