View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16437_low_6 (Length: 372)
Name: NF16437_low_6
Description: NF16437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16437_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 107 - 354
Target Start/End: Original strand, 12552786 - 12553033
Alignment:
| Q |
107 |
ttatactcttatggacaaagtgagtcttcaaagcaggatatttcaaaaggtgaatcaagtttacaagatcttgattatagcaaaatgagaagcatttcat |
206 |
Q |
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| T |
12552786 |
ttatactcttatggacaaagtgagtcttcaaagcaggatatttcaaaaggtgaatcaagtttacaagatcttgattatagcaaaatgagaagcatttcat |
12552885 |
T |
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| Q |
207 |
gtgtaaatcaagaagaaaatctacttcctgctttggttgcttcctctcctagaactggaatcttcaatcaaatcgaaaatgaccgcaacaaagctcaaat |
306 |
Q |
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| T |
12552886 |
gtgtaaatcaagaagaaaatctacttcctgctttggttgcttcctctcctagaattggaatcttcaatcaaatcgaaaatgaccgcaacaaagctcaaat |
12552985 |
T |
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| Q |
307 |
gtccatcgatcactcaccttcaaatgcaatctttgatgattgggagaa |
354 |
Q |
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| T |
12552986 |
gtccatcgatcactcaccttcaaatgcaatctttgatgattgggagaa |
12553033 |
T |
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