View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_high_14 (Length: 397)
Name: NF16438_high_14
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 195 - 379
Target Start/End: Original strand, 48308664 - 48308848
Alignment:
| Q |
195 |
ctgttttcacgaccaaactcctacgttctttcttgataggataagacacggtcttgttacaacaacttggtagcatgtgcttgtaattcatacgtgactt |
294 |
Q |
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| T |
48308664 |
ctgttttcacgaccaaactcctacgttctttcttgataggataagacacggtcctgttacaacaacttggtagcatgtgcttgtaattcatacgtgactt |
48308763 |
T |
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| Q |
295 |
tttattatgaagtgcacaaccacatttacggtggtaaggtctcttttcaaaggtattgtcatagccagatatgcttccttcatgc |
379 |
Q |
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| T |
48308764 |
tttattatgaagtgcacaaccacatttacggtggtaaggtctcttttcaaaggtattgtcatagccagatatgcttccttcatgc |
48308848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 48308470 - 48308613
Alignment:
| Q |
1 |
agattgcttcagatcattaattatttctataaactattatcaaacacatgaattaattattctcagaccttgaataatttaaaaatacttgtgatttggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
48308470 |
agattgcttcagatcattaattatttctataaactattatcaaacacatgaattaattcttctcagaccttgaataatttaaaaatacttgtgatttggc |
48308569 |
T |
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| Q |
101 |
tcctcctcctgctcttgaaggtttaccaaactcatcattacttg |
144 |
Q |
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| T |
48308570 |
tcctcctcctgctcttgaaggtttaccaaactcatcattacttg |
48308613 |
T |
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