View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_high_16 (Length: 371)
Name: NF16438_high_16
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_high_16 |
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| [»] scaffold0267 (1 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 364
Target Start/End: Original strand, 33637211 - 33637561
Alignment:
| Q |
14 |
aatataaattaactcataataactagtataaaattaaaatatcttcatccaaaggatttgattctaagctagcaataagtacaaaggaatcatccaacaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33637211 |
aatataaattaactcataataactagtataaaattaaaatatcttcatccaaaggatttgattctaagctagcaataagtacaaaggaatcatccaacaa |
33637310 |
T |
|
| Q |
114 |
aataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaacagttgttg |
213 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33637311 |
aatagttaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaacaattgttg |
33637410 |
T |
|
| Q |
214 |
catagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagct |
313 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33637411 |
catagaagcttaatgtggaagaggacggggaaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagct |
33637510 |
T |
|
| Q |
314 |
ttatcatctctcctattatacataataatatcatcaaaagctcctttgcta |
364 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33637511 |
ctatcatctctcctattatacatactaatatcatcaaaagctcctttgcta |
33637561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 82 - 290
Target Start/End: Complemental strand, 13824 - 13615
Alignment:
| Q |
82 |
ctagcaataagtacaaaggaatcatccaacaaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgac |
181 |
Q |
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||||||| |||||||| | ||||||||||||||||| | |||||||||| ||||||| |||||| ||||||| ||||| |||| | | ||||| || |
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| T |
13824 |
ctagcaacaagtacaatgaaatcatccaacaaaatagtcaaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcacaac |
13725 |
T |
|
| Q |
182 |
ctaacataaattca-aaatacaaacagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaa |
280 |
Q |
| |
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|||||||||||||| ||| ||||||| |||||||||| || |||||||||| ||||| |||||||||||||||| |||||||||||||||||| | | |
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| T |
13724 |
ctaacataaattcagaaaaacaaacatttgttgcatacgagattaatgtggacgaggacaaggcaaaaccaagctctgcatatgttcatcagcataacga |
13625 |
T |
|
| Q |
281 |
atttggttgt |
290 |
Q |
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|||||||||| |
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| T |
13624 |
atttggttgt |
13615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 82 - 290
Target Start/End: Complemental strand, 3838343 - 3838134
Alignment:
| Q |
82 |
ctagcaataagtacaaaggaatcatccaacaaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgac |
181 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||||| | |||||||||| ||||||| |||||| ||||||| ||||| |||| | | |||| || |
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| T |
3838343 |
ctagcaataagtacaatgaaatcatccagcaaaatagtcaaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcaaaac |
3838244 |
T |
|
| Q |
182 |
ctaacataaattca-aaatacaaacagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaa |
280 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| || |||||||||| ||||| |||||||||||||||| ||||||||| |||||||| | | |
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| T |
3838243 |
ctaacataaattcagaaaaacaaacagttgttgcatacgagattaatgtggatgaggacaaggcaaaaccaagctctgcatatgttcctcagcataacga |
3838144 |
T |
|
| Q |
281 |
atttggttgt |
290 |
Q |
| |
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|||||||||| |
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| T |
3838143 |
atttggttgt |
3838134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 212 - 340
Target Start/End: Complemental strand, 29125230 - 29125102
Alignment:
| Q |
212 |
tgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcag |
311 |
Q |
| |
|
||||||||||||||||| ||| ||||| | ||||||||||| |||| ||||||||||| ||||||| |||||||| || |||||| |||||| | |
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| T |
29125230 |
tgcatagaagcttaatgcggatgaggaagaggcaaaaccaaactctacatatgttcatgagcatacataatttggtggttgagaagtctaatatgactaa |
29125131 |
T |
|
| Q |
312 |
ctttatcatctctcctattatacataata |
340 |
Q |
| |
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|| |||||||||||||| ||||||||||| |
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| T |
29125130 |
ctctatcatctctcctactatacataata |
29125102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 281
Target Start/End: Complemental strand, 29126856 - 29126661
Alignment:
| Q |
86 |
caataagtacaaaggaatcatccaacaaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaa |
185 |
Q |
| |
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|||||| ||||| | ||||||| ||||||||||| ||||||| || |||||||||||||||||| | |||||| ||||||| |||||||| || ||| |
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| T |
29126856 |
caataaatacaatgaaatcatctaacaaaataatcaaactatttaaggaaaacacaattaaggaatattcaatagttatcacaccacttgcacaacttaa |
29126757 |
T |
|
| Q |
186 |
cataaattcaaaata-caaacagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaa |
281 |
Q |
| |
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|| ||| |||| | |||| ||||||||||||||| |||||| |||| |||| ||||||| |||||| | |||||||||| | ||||||||| |
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| T |
29126756 |
tgtatattaaaaaaatcaaattgttgttgcatagaagtttaatg-ggaatgagatgaggcaaaatcaagctatgcatatgttcaccgacataccaaa |
29126661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 341
Target Start/End: Original strand, 13784008 - 13784247
Alignment:
| Q |
102 |
atcatccaacaaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatac |
201 |
Q |
| |
|
||||| |||||||||| | |||||| ||| ||||||||| |||||||||||| |||| |||||| | |||| || || || || ||| ||| || |
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| T |
13784008 |
atcatacaacaaaatagtcaaactagctaaggaaaacacatttaaggaaccatcgatagccatcacgccactttcatagtttagcaaaagttctaaaaac |
13784107 |
T |
|
| Q |
202 |
aaacagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttca |
301 |
Q |
| |
|
||||| ||| || | || ||||||||||||| ||| ||| |||||||||||||| | |||||||||||| || |||||||| ||||| | ||| || | |
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|
| T |
13784108 |
aaacaattgatgtagaggagcttaatgtggatgagaatgaggcaaaaccaagctatgcatatgttcatcggccgcccaaattttgttgttaggaaattga |
13784207 |
T |
|
| Q |
302 |
atatgttcagctttatcatctctcctattatacataataa |
341 |
Q |
| |
|
| | |||| || |||||||||||| |||||||||||||| |
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|
| T |
13784208 |
agaaattcaactatatcatctctccgattatacataataa |
13784247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 13783859 - 13783911
Alignment:
| Q |
13 |
aaatataaattaactcataataactagtataaaattaaaatatcttcatccaa |
65 |
Q |
| |
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||||||||| ||||||||| ||| || ||||||||||||||||| |||||||| |
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| T |
13783859 |
aaatataaactaactcatactaattaatataaaattaaaatatcatcatccaa |
13783911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 341
Target Start/End: Original strand, 33781 - 33907
Alignment:
| Q |
215 |
atagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctt |
314 |
Q |
| |
|
|||| ||||||||||||| ||||| | |||||||||||||| |||||||||||| || |||||||||||||| | ||||| || | || | || |
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|
| T |
33781 |
ataggagcttaatgtggatgaggacgaggcaaaaccaagctacgcatatgttcatcggccgcccaaatttggttgttaggaagtcgaagaaattgaacta |
33880 |
T |
|
| Q |
315 |
tatcatctctcctattatacataataa |
341 |
Q |
| |
|
|||||||||||| |||||||||||||| |
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|
| T |
33881 |
tatcatctctccgattatacataataa |
33907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 275
Target Start/End: Original strand, 20475629 - 20475806
Alignment:
| Q |
99 |
ggaatcatccaacaaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aa |
197 |
Q |
| |
|
|||||||||||||||||| | |||||| | | ||||||||||||||| |||||| ||| || | || | |||| || | |||| ||||||||| || |
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|
| T |
20475629 |
ggaatcatccaacaaaattgtaaaactagccaaggaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatctaaaataaattcagaa |
20475728 |
T |
|
| Q |
198 |
atacaaacagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcat |
275 |
Q |
| |
|
| | ||| ||||||||||| | |||||||| |||| |||| | |||||||||||||||| |||||| |||| ||||| |
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|
| T |
20475729 |
aaataaatagttgttgcattgcagcttaatttggacaaggacgaggcaaaaccaagctctgcatatgctcatgagcat |
20475806 |
T |
|
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