View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16438_high_23 (Length: 318)

Name: NF16438_high_23
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16438_high_23
NF16438_high_23
[»] chr3 (3 HSPs)
chr3 (70-223)||(51144534-51144686)
chr3 (69-223)||(20894273-20894426)
chr3 (15-57)||(3696439-3696483)
[»] chr4 (15 HSPs)
chr4 (78-196)||(48031687-48031804)
chr4 (70-223)||(30309917-30310070)
chr4 (70-223)||(8934587-8934723)
chr4 (69-146)||(19113903-19113979)
chr4 (70-136)||(19644476-19644541)
chr4 (70-134)||(49926531-49926594)
chr4 (69-136)||(23118920-23118986)
chr4 (69-136)||(23657157-23657223)
chr4 (77-136)||(33988358-33988416)
chr4 (70-128)||(7472893-7472950)
chr4 (155-223)||(23657226-23657294)
chr4 (167-223)||(33988287-33988343)
chr4 (155-223)||(19644544-19644612)
chr4 (161-223)||(23118995-23119057)
chr4 (175-223)||(7472980-7473028)
[»] chr6 (10 HSPs)
chr6 (69-226)||(5086539-5086695)
chr6 (70-223)||(33019450-33019602)
chr6 (69-136)||(504121-504187)
chr6 (69-136)||(8263730-8263796)
chr6 (69-132)||(15644220-15644282)
chr6 (69-136)||(19226998-19227064)
chr6 (155-223)||(8263799-8263867)
chr6 (167-223)||(504050-504106)
chr6 (167-223)||(19227079-19227135)
chr6 (167-223)||(33639483-33639539)
[»] chr1 (6 HSPs)
chr1 (69-223)||(7178354-7178507)
chr1 (69-223)||(34709434-34709591)
chr1 (70-223)||(25505512-25505648)
chr1 (69-223)||(24314504-24314641)
chr1 (28-57)||(21443265-21443294)
chr1 (28-57)||(29019174-29019203)
[»] chr8 (5 HSPs)
chr8 (69-223)||(13909096-13909249)
chr8 (155-223)||(36319009-36319077)
chr8 (70-136)||(4988655-4988720)
chr8 (70-136)||(36319080-36319145)
chr8 (167-223)||(4988584-4988640)
[»] chr2 (3 HSPs)
chr2 (70-223)||(15017144-15017297)
chr2 (69-223)||(5325231-5325380)
chr2 (70-136)||(10978595-10978660)
[»] chr7 (13 HSPs)
chr7 (70-223)||(21439428-21439580)
chr7 (70-136)||(25923556-25923621)
chr7 (70-223)||(45987534-45987671)
chr7 (70-148)||(6970402-6970479)
chr7 (69-223)||(34519123-34519260)
chr7 (69-151)||(33796958-33797043)
chr7 (167-223)||(6970570-6970626)
chr7 (69-121)||(14053994-14054045)
chr7 (69-121)||(14364022-14364073)
chr7 (155-223)||(17804499-17804567)
chr7 (155-223)||(25923624-25923692)
chr7 (70-152)||(2009408-2009492)
chr7 (69-136)||(17804433-17804496)
[»] chr5 (5 HSPs)
chr5 (134-223)||(22095769-22095858)
chr5 (78-223)||(11575211-11575356)
chr5 (69-129)||(22095893-22095952)
chr5 (166-223)||(5415666-5415723)
chr5 (70-103)||(5415730-5415763)
[»] scaffold0108 (2 HSPs)
scaffold0108 (69-136)||(10393-10459)
scaffold0108 (168-223)||(10475-10530)


Alignment Details
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 51144534 - 51144686
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaacagagttcagtattctatac 169  Q
    ||||||||||||||||||||||| |||||| ||||||| || ||||||||| |||||||| ||||||| ||||||||||||| ||||||||| ||| |||    
T  51144534 aacaataaaaaatggaattatataaacaaccagagtct-cattagcacaagacgtgccaccaagactcctcaagaaacaacaaagttcagtagtctttac 51144632  T
Q  170 aacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    |||||||||||||| |||||||||||| | ||||| ||||||| ||||||||||    
T  51144633 aacaacaaaaccaaattagccaatacccagacattgtaaagggcttgaccacca 51144686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 20894426 - 20894273
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaacagagttcagtattctata 168  Q
    ||||||| |||||||||||||||||||||||||||||| ||| ||||| |||||||||| |||||||||||||||||||| || |    || | ||  ||    
T  20894426 gaacaattaaaaatggaattatattaacaacaagagtc-tcattagcataaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagtcagta 20894328  T
Q  169 caacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||||| |||||| || |||||||||| ||||||| ||||||| ||||||||||    
T  20894327 caacaacgaaaccatctcagccaatacccaaacattgtaaagggcttgaccacca 20894273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 3696439 - 3696483
Alignment:
Q  15 aatattaacacata--ataaaattaacttttaagaatttgtgtta 57  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||    
T  3696439 aatattaacacatataataaaattaacttttaggaatttgtgtta 3696483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 48031804 - 48031687
Alignment:
Q  78 aaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaacagagttcagtattctatacaacaacaa 177  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||| | | | |||||||||||    
T  48031804 aaaatggaattatattaacaacaagagtct-caatagcacaaggcgtgccacaaagactagtcaagaaacagcaaagttcaggagtatctacaacaacaa 48031706  T
Q  178 aaccaacttagccaatacc 196  Q
    |||||||||||||||||||    
T  48031705 aaccaacttagccaatacc 48031687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 30309917 - 30310070
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaag-aaacaacagagttcagtattctata 168  Q
    |||||| |||||||||||||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||| ||||| || |    || | || |||    
T  30309917 aacaatcaaaaatggaattatattaacaacaagagtc-tcgttagcacaaggcgtgcctcaaagactcgtcaagaaaacaccaaaaagtagaagtcaata 30310015  T
Q  169 caacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||||| | ||||||| |||||||| | ||||||| ||||||| ||||||||||    
T  30310016 caacaacgacaccaactcagccaatatccaaacattgtaaagggtttgaccacca 30310070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 8934587 - 8934723
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaacagagttcagtattctatac 169  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||                | ||||| ||||| |||    
T  8934587 aacaatcaaaaatggaattatattaacaacaatagtc-tcaatagcacaagacgtgccacaaagact----------------acttcagaattctgtac 8934669  T
Q  170 aacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    |||||||||||||| |||||||||||| ||||||||||| ||| ||||||||||    
T  8934670 aacaacaaaaccaagttagccaatacccaaacattataacgggtttgaccacca 8934723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 19113903 - 19113979
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaa 146  Q
    ||||||| |||||||||||||||||||||||||||||  ||| ||||||||||| |||| ||||||||||||||||||    
T  19113903 gaacaatcaaaaatggaattatattaacaacaagagt-gtcattagcacaaggcatgcctcaaagactcgtcaagaaa 19113979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 19644476 - 19644541
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagact 136  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  19644476 aacaatcaaaaatggaattatattaacaacaagagtc-tcaatagcacaagatgtgccacaaagact 19644541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 49926594 - 49926531
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaaga 134  Q
    ||||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||||||||||    
T  49926594 aacaataaaaaatagaattatattaacaacaagagtc-tcattagcacaagacgtgccacaaaga 49926531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 23118920 - 23118986
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagact 136  Q
    ||||||| |||||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||||||    
T  23118920 gaacaatcaaaaatgggattatattaacaacaagagtc-tcaatagcacaagacgtgccaccaagact 23118986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 23657157 - 23657223
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagact 136  Q
    ||||||| |||||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||||||    
T  23657157 gaacaattaaaaatgggattatattaacaacaagagtc-tcaatagcacaagacgtgccaccaagact 23657223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 33988416 - 33988358
Alignment:
Q  77 aaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagact 136  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||    
T  33988416 aaaaatggaattatattaacaacaagagtc-tcattagcacaagacgtgccacaaagact 33988358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 7472893 - 7472950
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgcca 128  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||    
T  7472893 aacaataaaaaatggaattatattaataacaagagtc-tcaatagcacaagacgtgcca 7472950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 23657226 - 23657294
Alignment:
Q  155 ttcagtattctatacaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||| ||||| |||||||||||||||||  ||||||||||||| ||||| ||| ||| ||||||||||    
T  23657226 ttcagaattctgtacaacaacaaaaccaagctagccaatacctagacattgtaacgggtttgaccacca 23657294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 33988343 - 33988287
Alignment:
Q  167 tacaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||||||||||||||| |||||||||||| ||||||| ||| ||| ||||||||||    
T  33988343 tacaacaacaaaaccaagttagccaatacccaaacattgtaacgggtttgaccacca 33988287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 19644544 - 19644612
Alignment:
Q  155 ttcagtattctatacaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||| ||||  ||||||||||||| ||| |||||||||||| ||||||| ||| ||| ||||||||||    
T  19644544 ttcagaattcagtacaacaacaaaaacaagttagccaatacccaaacattgtaacgggtttgaccacca 19644612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 23118995 - 23119057
Alignment:
Q  161 attctatacaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||| |||||||||||||||||  ||||||||||| | ||||| ||| ||| ||||||||||    
T  23118995 attctgtacaacaacaaaaccaagctagccaatacccagacattgtaacgggtttgaccacca 23119057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 7472980 - 7473028
Alignment:
Q  175 caaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||||||| |||||||||||| ||||||| ||| ||| ||||||||||    
T  7472980 caaaaccaagttagccaatacccaaacattgtaacgggtttgaccacca 7473028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 69 - 226
Target Start/End: Complemental strand, 5086695 - 5086539
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaacagagttcagtattctata 168  Q
    ||||||| ||||||||||||||||||||||||||||||| || ||||||||||| |||| |||||| || ||||| |  |||| | ||||| | ||| ||    
T  5086695 gaacaatcaaaaatggaattatattaacaacaagagtct-cattagcacaaggcatgcctcaaagattcctcaaggaggaacaaaattcagaagtctgta 5086597  T
Q  169 caacaacaaaaccaacttagccaatacctaaacattataaagggattgaccaccatct 226  Q
    |||||||||||||||||||||||||||  ||||||| ||||||| |||||||||||||    
T  5086596 caacaacaaaaccaacttagccaatactcaaacattgtaaaggggttgaccaccatct 5086539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 33019450 - 33019602
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaacagagttcagtattctatac 169  Q
    |||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||| ||||||||| |||||||||| |  | |  || | ||  |||    
T  33019450 aacaataaaaaatgtaattatattaacaacaagag-cctcattagcacaaggcgtgcctcaaagactcatcaagaaacaccgaaatgtagaagtcagtac 33019548  T
Q  170 aacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
     ||||||||||||||| |||||||||| ||||||| ||||||| ||||||||||    
T  33019549 tacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccacca 33019602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 504187 - 504121
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagact 136  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  504187 gaacaatcaaaaatggaattatattaacaacaagagtc-tcaatagcacaagacgtgccacaaagact 504121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 8263730 - 8263796
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagact 136  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  8263730 gaacaataaaaaatgggattatattaacaacaagagtc-tcaatagcacaagacgtgccacaaagact 8263796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 15644282 - 15644220
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaa 132  Q
    ||||||| |||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  15644282 gaacaatcaaaaatggaattatattaacaacaagagtc-tcattagcacaagacgtgccacaaa 15644220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 19226998 - 19227064
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagact 136  Q
    ||||||| ||||||||||||| |||||||||||||||| |||||||||||||  ||||||||||||||    
T  19226998 gaacaatcaaaaatggaattaaattaacaacaagagtc-tcaatagcacaagatgtgccacaaagact 19227064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 8263799 - 8263867
Alignment:
Q  155 ttcagtattctatacaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    |||| |||||| ||||||| ||||||||| |||||||||||| ||||||| ||| ||| ||||||||||    
T  8263799 ttcaatattctgtacaacagcaaaaccaagttagccaatacccaaacattgtaacgggtttgaccacca 8263867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 504106 - 504050
Alignment:
Q  167 tacaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||||| ||||||||| |||||||||||| ||||||| ||| ||| ||||||||||    
T  504106 tacaacagcaaaaccaagttagccaatacccaaacattgtaacgggtttgaccacca 504050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 19227079 - 19227135
Alignment:
Q  167 tacaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||| ||||||| ||| |||||||||||| ||||||| ||| ||| ||||||||||    
T  19227079 tacaataacaaaaacaagttagccaatacccaaacattgtaacgggtttgaccacca 19227135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 33639483 - 33639539
Alignment:
Q  167 tacaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||||||||||| ||| |||||| ||||| ||||||| ||| ||| ||||||||||    
T  33639483 tacaacaacaaaaacaagttagccgatacccaaacattgtaacgggtttgaccacca 33639539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 7178354 - 7178507
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaacagagttcagtattctata 168  Q
    ||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| || |    || | ||  ||    
T  7178354 gaacaatcaaaaatggaattatattaacaacaagagtc-tcattagcacaaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagtcagta 7178452  T
Q  169 caacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||||| ||||||||| |||||||||| ||||||| ||||||| ||||||||||    
T  7178453 caacaacgaaaccaactcagccaatacccaaacattgtaaagggcttgaccacca 7178507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 34709591 - 34709434
Alignment:
Q  69 gaacaataaaaaatggaattatattaaca----acaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaacagagttcagtattc 164  Q
    ||||||| |||||||||||||||||||||    |||||||||| |||||||||||| |||||||||||||||| ||| |||||||||| || || |  ||    
T  34709591 gaacaatcaaaaatggaattatattaacagcacacaagagtct-caatagcacaagacgtgccacaaagactcctcaggaaacaacagtgtccaattgtc 34709493  T
Q  165 tatacaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    | ||| |||||||||||||||||| |||| || | ||||| ||||||| ||||| ||||    
T  34709492 tgtacgacaacaaaaccaacttagtcaatgcccagacattgtaaagggcttgacaacca 34709434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 25505648 - 25505512
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaacagagttcagtattctatac 169  Q
    |||||| |||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||                | ||||| ||||| |||    
T  25505648 aacaattaaaaatggaattatattaacaacaagagtc-tcattagcacaagacgtgccacaaagact----------------acttcagaattctgtac 25505566  T
Q  170 aacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    |||||||||||||| |||||||||||| ||||||| ||| ||| ||||||||||    
T  25505565 aacaacaaaaccaagttagccaatacccaaacattgtaacgggtttgaccacca 25505512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 24314504 - 24314641
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaacagagttcagtattctata 168  Q
    ||||||| ||||||| |||||||||||||||| |||||| || ||||||||| |||||||||||||||                | ||||| ||||||||    
T  24314504 gaacaatcaaaaatgaaattatattaacaacaggagtct-cactagcacaagacgtgccacaaagact----------------acttcagaattctata 24314586  T
Q  169 caacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    |||| |||||||||| |||||||||||| ||||||| ||| ||| ||||||||||    
T  24314587 caaccacaaaaccaagttagccaatacccaaacattgtaacgggtttgaccacca 24314641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 57
Target Start/End: Original strand, 21443265 - 21443294
Alignment:
Q  28 aataaaattaacttttaagaatttgtgtta 57  Q
    ||||||||||||||||||||||||||||||    
T  21443265 aataaaattaacttttaagaatttgtgtta 21443294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 57
Target Start/End: Complemental strand, 29019203 - 29019174
Alignment:
Q  28 aataaaattaacttttaagaatttgtgtta 57  Q
    ||||||||||||||||||||||||||||||    
T  29019203 aataaaattaacttttaagaatttgtgtta 29019174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 13909096 - 13909249
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaacagagttcagtattctata 168  Q
    ||||||| ||||||| |||||||||||||||||||| ||| | |||||||||||||||| ||||||||| |||||||||| |  | |  || | ||  ||    
T  13909096 gaacaatcaaaaatgaaattatattaacaacaagagcctt-attagcacaaggcgtgcctcaaagactcatcaagaaacaccgaaatgtagaagtcagta 13909194  T
Q  169 caacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||||||||||||||| |||||||||| ||||||| ||||||| ||||||||||    
T  13909195 caacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccacca 13909249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 36319077 - 36319009
Alignment:
Q  155 ttcagtattctatacaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||| ||||| ||||||| ||||||||| |||||||||||||||||||| ||||||| ||||||||||    
T  36319077 ttcaggattctctacaacagcaaaaccaagttagccaatacctaaacattgtaaagggtttgaccacca 36319009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 4988720 - 4988655
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagact 136  Q
    |||||| |||||| ||||||||||| ||||||||||| |||||||||||||  |||||| |||||||    
T  4988720 aacaatcaaaaatagaattatattaccaacaagagtc-tcaatagcacaagatgtgccataaagact 4988655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 36319145 - 36319080
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagact 136  Q
    |||||| |||||||| ||||||||||||||||||||| |||||||||||||  ||| || |||||||    
T  36319145 aacaatcaaaaatgggattatattaacaacaagagtc-tcaatagcacaagatgtgtcataaagact 36319080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 4988640 - 4988584
Alignment:
Q  167 tacaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||| ||||||| ||| |||||||||||| ||||||| ||| ||| ||||||||||    
T  4988640 tacaataacaaaaacaagttagccaatacccaaacattgtaacgggtttgaccacca 4988584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 15017144 - 15017297
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaag-aaacaacagagttcagtattctata 168  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||| || |    || | ||  ||    
T  15017144 aacaataaaaaatggaattatattaacaacaagagtc-tcattagcacaaggcgtgcctcaaagactcgtcaagaaaacaccaaaaagtagaagtcagta 15017242  T
Q  169 caacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||||| ||||||||| | |||||||| ||||||| ||||||| ||||||||||    
T  15017243 caacaacgaaaccaactcaaccaatacccaaacattgtaaagggcttgaccacca 15017297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 5325231 - 5325380
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaacagagttcagtattctata 168  Q
    ||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||| || |    || |     ||    
T  5325231 gaacaatcaaaaatgaaattatattaacaacaagagtct-cattagcacaaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaa----gta 5325325  T
Q  169 caacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||||| ||||||||| |||||||| | ||||||| ||||||| ||||||||||    
T  5325326 caacaacgaaaccaactcagccaatatccaaacattgtaaagggcttgaccacca 5325380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 10978660 - 10978595
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagact 136  Q
    |||||| |||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  10978660 aacaattaaaaatgggattatattaacaacaagagtc-tcaatagcacaagatgtgccacaaagact 10978595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 21439580 - 21439428
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaacagagttcagtattctatac 169  Q
    |||||| ||||||| |||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||| || |    || | ||  |||    
T  21439580 aacaatcaaaaatgaaattatattaacaacaagagtc-tcattagcgcaaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagtcagtac 21439482  T
Q  170 aacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    |||||| ||||||||| |||||||||| ||||||| ||||||| ||||||||||    
T  21439481 aacaacgaaaccaactcagccaatacccaaacattgtaaagggcttgaccacca 21439428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 25923556 - 25923621
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagact 136  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  25923556 aacaatcaaaaatgggattatattaacaacaagagtc-tcaatagcacaagacgtgccacaaagact 25923621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 45987534 - 45987671
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaacagagttcagtattctatac 169  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||         || ||||||      ||||  |||    
T  45987534 aacaatcaaaaatggaattatattaacaacaagagtct-caatagcacaagatgtgccacaaagact---------actacagag------attcagtac 45987617  T
Q  170 aacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    |||||||||| ||| |||||||||||| ||||||||||| ||| ||||||||||    
T  45987618 aacaacaaaaacaagttagccaatacccaaacattataacgggtttgaccacca 45987671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 6970402 - 6970479
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaaca 148  Q
    |||||| ||||||| |||||||||||||||||||| || |  |||||||||||||||| |||||||||||| |||||||    
T  6970402 aacaatcaaaaatgaaattatattaacaacaagagcct-cgttagcacaaggcgtgcctcaaagactcgtccagaaaca 6970479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 34519260 - 34519123
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaacagagttcagtattctata 168  Q
    ||||||| ||||||| ||| |||||||||||||||||| |||||||||||||  ||||||||||||||         || |||||||||||       ||    
T  34519260 gaacaatcaaaaatgaaataatattaacaacaagagtc-tcaatagcacaagatgtgccacaaagact---------actacagagttcag-------ta 34519178  T
Q  169 caacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||||||||| ||| |||||||||||| ||||||| ||| ||| ||||||||||    
T  34519177 caacaacaaaaacaagttagccaatacccaaacattgtaacgggtttgaccacca 34519123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 33797043 - 33796958
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaa----caagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaaca 151  Q
    ||||||| ||||||||||||||||||||||    ||||| | | |||||||||||||||||||||  |||||| |||||||||||||    
T  33797043 gaacaatcaaaaatggaattatattaacaaatcacaagaatat-caatagcacaaggcgtgccactgagactcctcaagaaacaaca 33796958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 6970570 - 6970626
Alignment:
Q  167 tacaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||||||||||| ||||| |||||||||| ||||||| ||||||| ||||||||||    
T  6970570 tacaacaacaaaatcaactcagccaatacccaaacattgtaaagggcttgaccacca 6970626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 14053994 - 14054045
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaagg 121  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  14053994 gaacaatcaaaaatggaattatattaacaataagagtc-tcaatagcacaagg 14054045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 14364022 - 14364073
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaagg 121  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  14364022 gaacaatcaaaaatggaattatattaacaataagagtc-tcaatagcacaagg 14364073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 17804499 - 17804567
Alignment:
Q  155 ttcagtattctatacaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||| ||||| ||||||||||||| ||| |||||||||||| ||||||| ||| ||| ||||||||||    
T  17804499 ttcaggattctgtacaacaacaaaatcaagttagccaatacccaaacattgtaacgggtttgaccacca 17804567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 25923624 - 25923692
Alignment:
Q  155 ttcagtattctatacaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    ||||| ||||| ||||||| ||||||||| |||||||||||| ||||||| ||| ||| ||||||||||    
T  25923624 ttcaggattctgtacaacagcaaaaccaagttagccaatacccaaacattgtaacgggtttgaccacca 25923692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 2009492 - 2009408
Alignment:
Q  70 aacaataaaaaatggaattatattaacaa---caagagtcttcaatagcacaaggcgtgccacaaagactcgtcaagaaacaacag 152  Q
    |||||| || ||| |||||||||||||||   ||||| ||| |||||||||||||||||||||  | |||| ||||||||||||||    
T  2009492 aacaatcaagaatagaattatattaacaaacacaagaatct-caatagcacaaggcgtgccactgaaactcctcaagaaacaacag 2009408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 17804433 - 17804496
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagact 136  Q
    ||||||| |||||||| ||||||||   |||||||||| ||||||||||||| ||||| |||||||||    
T  17804433 gaacaatcaaaaatgggattatatt---aacaagagtc-tcaatagcacaagacgtgctacaaagact 17804496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 22095858 - 22095769
Alignment:
Q  134 actcgtcaagaaacaacagagttcagtattctatacaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    |||| ||||||||||||| || |||||| |||||||| |||||||||||| |||||||||||| | ||||| ||||||| ||||||||||    
T  22095858 actcctcaagaaacaacaaagatcagtagtctatacaccaacaaaaccaaattagccaatacccagacattgtaaagggcttgaccacca 22095769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 11575356 - 11575211
Alignment:
Q  78 aaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagactcgtcaa-gaaacaacagagttcagtattctatacaacaaca 176  Q
    ||||||||||||||||||||||||||||| ||| |||||||| ||||||| |||| |||||||||  ||||| || |    || | ||  |||||||||     
T  11575356 aaaatggaattatattaacaacaagagtc-tcattagcacaaagcgtgcctcaaatactcgtcaacaaaacaccaaaaagtagaagtcagtacaacaacg 11575258  T
Q  177 aaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    | ||||||| |||||||||| ||||||| ||||||| ||||||||||    
T  11575257 acaccaactaagccaatacccaaacattgtaaagggcttgaccacca 11575211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 22095952 - 22095893
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccac 129  Q
    ||||||| |||||||||||||||| |||||| |||||| ||| ||||||||||||||||||    
T  22095952 gaacaatcaaaaatggaattatataaacaaccagagtc-tcattagcacaaggcgtgccac 22095893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 5415723 - 5415666
Alignment:
Q  166 atacaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    |||| |||||||||| || |||||||||||| ||||||| ||| ||| ||||||||||    
T  5415723 ataccacaacaaaacaaagttagccaatacccaaacattgtaacgggtttgaccacca 5415666  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 5415763 - 5415730
Alignment:
Q  70 aacaataaaaaatggaattatattaacaacaaga 103  Q
    |||||| |||||||||||||||||||||||||||    
T  5415763 aacaatcaaaaatggaattatattaacaacaaga 5415730  T

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Target: scaffold0108 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 10393 - 10459
Alignment:
Q  69 gaacaataaaaaatggaattatattaacaacaagagtcttcaatagcacaaggcgtgccacaaagact 136  Q
    ||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||    
T  10393 gaacaatcaaaaatggaattatattaacaacaagagtc-tcattagcacaagacgtgctacaaagact 10459  T

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Target: scaffold0108; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 10475 - 10530
Alignment:
Q  168 acaacaacaaaaccaacttagccaatacctaaacattataaagggattgaccacca 223  Q
    |||||||||||||||| |||||||||||| ||||||| ||| ||| || |||||||    
T  10475 acaacaacaaaaccaagttagccaatacccaaacattgtaacgggtttaaccacca 10530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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