View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_high_28 (Length: 272)
Name: NF16438_high_28
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 37264701 - 37264460
Alignment:
| Q |
17 |
aatataaataaattgtgccacaacaataacccaccaagaaaaactcaaaaccaatgaagctcccaatagtcccaacccaatcttaaacacaacaacccaa |
116 |
Q |
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| T |
37264701 |
aatataaataaattgtgccacaacaataacccaccaagaaaaactcaaaaccaatgaagctcccaatagtcctaaccctatcttaaacacaacaacccaa |
37264602 |
T |
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| Q |
117 |
cttaatattaaatgaaaaactaaagttcctgctgaaatgtatgcacttggtagaactatactttgtgcttgaagaaatttttggattggaaaatttactg |
216 |
Q |
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| T |
37264601 |
cttaatattagatgaaaaactaaagttcctgctgaaatgtatgcacttggtagaactatactttgtgcttgaagaaatttttggattgggaaatttactg |
37264502 |
T |
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| Q |
217 |
cataagcaaatatttgtgggataagtccatacacaaaaagtg |
258 |
Q |
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| T |
37264501 |
cataagcaaatatttgtgggataagtccatacacaaaaagtg |
37264460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 8004538 - 8004578
Alignment:
| Q |
33 |
gccacaacaataacccaccaagaaaaactcaaaaccaatga |
73 |
Q |
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| T |
8004538 |
gccaccacaataacccaccaacaaaaactcaaaaccaatga |
8004578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 16945142 - 16945365
Alignment:
| Q |
15 |
acaatataaataaattgtgccacaacaataacccaccaagaaaaactcaaaaccaatgaagctcccaatagtcccaacccaatcttaaacacaacaaccc |
114 |
Q |
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| T |
16945142 |
acaatataaacaaattgtgcaatcacaattatccaccaagaaatactcaaaaccaatgaagcacctaataaaccaagcccaatttggtagataacaacat |
16945241 |
T |
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| Q |
115 |
aacttaatattaaatgaaaaactaaagttcctgctgaaatgtatgcacttggtagaactatactttgtgcttgaagaaatttttggattggaaaatttac |
214 |
Q |
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| T |
16945242 |
aacttaacacaaggtgaataaccaatgttgctgctgatatgtatgcacttggtgctactatgctttgtgcttgaagaaatttttggattggaaagtttat |
16945341 |
T |
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| Q |
215 |
tgcataagcaaatatttgtgggat |
238 |
Q |
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||||| ||||||||||||||||| |
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| T |
16945342 |
agcataggcaaatatttgtgggat |
16945365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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