View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_high_30 (Length: 258)
Name: NF16438_high_30
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 39554672 - 39554897
Alignment:
| Q |
17 |
ttgtccgtttgaaacaaatgattttcttaatggaagattcaagttaatattgcacgtttttgtgattatgctgcaacactatgttgtagtttcggggcca |
116 |
Q |
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| T |
39554672 |
ttgtccgtttgaaacaaatgattttcttaatggaagattcaagttaatattgcacgtttttgtgattatgctgcaacactatgttgtagtttcggggcca |
39554771 |
T |
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| Q |
117 |
attggctttgattcagaaagcaccattttttatggtacctatcatgtttgttggaataattgtgtgggctaaaggaatgtatttacatggttgcaaatgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554772 |
attggctttgattcagaaagcaccattttttatggtacctatcatgtttgttggaataattgtgtgggctaaaggaatgtatttacatggttgcaaatgt |
39554871 |
T |
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| Q |
217 |
aggaatttgataactgggtaaaaaat |
242 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
39554872 |
aggaatttaataactgggtaaaaaat |
39554897 |
T |
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