View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_high_31 (Length: 254)
Name: NF16438_high_31
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_high_31 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 39554373 - 39554608
Alignment:
| Q |
19 |
ggggctctctacggcattatttacagtactattgttggaaagaaaaacaatgtttcttggccattgtgtgtaatgtcaatttttatttgcttgcttgtct |
118 |
Q |
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| T |
39554373 |
ggggctctctacggcattatttacagtactattgttggaaagaaaaacaatgtttcttggccattgtgtgtaatgtcaatttttatttgcttgcttgtct |
39554472 |
T |
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| Q |
119 |
tgtcattaagacttatattcttgtatacatcccctgtaggtagaatgcaattgcttctaatcatattattttgcttgctcgtcttgccatagtgttgtga |
218 |
Q |
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| T |
39554473 |
tgtcattaagacttatattcttgtatacatcccctgtaggtagaatgcaattgcttctaatcatattattttgcttgctcgtcttgccatagtgttgtga |
39554572 |
T |
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| Q |
219 |
acctggtgactacctggttaatgaacactatatagc |
254 |
Q |
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| T |
39554573 |
gcctggtgactacctggttaatgaacactatatagc |
39554608 |
T |
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