View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_high_34 (Length: 243)
Name: NF16438_high_34
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_high_34 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 3093618 - 3093393
Alignment:
| Q |
18 |
gaaaaatatttttgtaatatttgctatttgttagctaggtcatgccatgccataccatattgtttatttggttttgatgttaacttctaaataataaatt |
117 |
Q |
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| T |
3093618 |
gaaaaatatttttgtaatatttgctatttgttagctaggtcatgccataccataccatattgtttatttggttttgatgttaacttctaaataataaatt |
3093519 |
T |
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| Q |
118 |
gacgtggatgaaacttaaccagatgaaattccatgtggtttcgaaagtatcacattagattagatgtaacatgtctttaaaaagtaagtcataggtcaaa |
217 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3093518 |
gacgtggatgaaacttaaccggatgaaattccatgtggttttgaaagtctcacattagattagatgtaacatgtctttaaaaagtaagtcataggtcaaa |
3093419 |
T |
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| Q |
218 |
gacatatcacactagtttgtaagaat |
243 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
3093418 |
gacatatcgcactagtttgtaagaat |
3093393 |
T |
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