View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_high_6 (Length: 442)
Name: NF16438_high_6
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 47451730 - 47451315
Alignment:
| Q |
18 |
acttttgttgtttgtgtaaatttgttcaggcagaagaggaagcactgatgtttcagcagtatgttgctagcgaaaatactcaggaatttgagagtcgagt |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47451730 |
acttttgttgtctgtgtaaatttgttcaggcagaagaggaagcactgatgtttcagcagtatgttgctagcgaaaatactcaggaatttgagagtcgagt |
47451631 |
T |
|
| Q |
118 |
acgaccatatgttactcaagtcctcatggtaattttcattttattacattgcaacgattaaatcatcattgtaatagtagtagagtaaatcggcatctta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47451630 |
acgaccatatgttactcaagtcctcatggtaattttcattttattacattgcaacgattaaatcatcattgtaatagtagtagagttaatcggcatctta |
47451531 |
T |
|
| Q |
218 |
ttccttcaaattgatccggttcggtcgatttaatcatcatgtttgtgaaatagcaatttagtctcttaaattgaacaatgttggccaatttagatt-nnn |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47451530 |
ttccttcaaattgatccggttcggtcgatttaatcatcatgtttgtgaaatagcaatttagtctcttaaattgaacaatgttggccaatttagattaaaa |
47451431 |
T |
|
| Q |
317 |
nnnnttcaaatttattactacaatgtaaaggttctatacttgccttaatgatgctagagactattcaagtcaatatgtgagtattacattgnnnnnnnat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47451430 |
aaaattcaaatttattactacaatgtaaaggttctatacttgccttaatgatgctagagactattcaagtcaatatgtgagtattacattgtttttttat |
47451331 |
T |
|
| Q |
417 |
ggatgtttactgatga |
432 |
Q |
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|||||||||||||||| |
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| T |
47451330 |
ggatgtttactgatga |
47451315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 35138588 - 35138539
Alignment:
| Q |
259 |
tttgtgaaatagcaatttagtctcttaaattgaacaatgttggccaattt |
308 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||| | |||||| |
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| T |
35138588 |
tttgcgaaatagcaatttagtcccttaaattgaacaatgttagtcaattt |
35138539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 32812032 - 32811996
Alignment:
| Q |
263 |
tgaaatagcaatttagtctcttaaattgaacaatgtt |
299 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
32812032 |
tgaagtagcaatttagtctcttaaattgaacaatgtt |
32811996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 297
Target Start/End: Original strand, 34589855 - 34589893
Alignment:
| Q |
259 |
tttgtgaaatagcaatttagtctcttaaattgaacaatg |
297 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||| |
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| T |
34589855 |
tttgtgaactagcaatttagtctcttaaactgaacaatg |
34589893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 34608785 - 34608821
Alignment:
| Q |
259 |
tttgtgaaatagcaatttagtctcttaaattgaacaa |
295 |
Q |
| |
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||||| || |||||||||||||||||||||||||||| |
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|
| T |
34608785 |
tttgtaaactagcaatttagtctcttaaattgaacaa |
34608821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 34732280 - 34732316
Alignment:
| Q |
259 |
tttgtgaaatagcaatttagtctcttaaattgaacaa |
295 |
Q |
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||||| || |||||||||||||||||||||||||||| |
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|
| T |
34732280 |
tttgtaaactagcaatttagtctcttaaattgaacaa |
34732316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 289
Target Start/End: Complemental strand, 2420021 - 2419991
Alignment:
| Q |
259 |
tttgtgaaatagcaatttagtctcttaaatt |
289 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2420021 |
tttgtgaaatagcaatttagtctcttaaatt |
2419991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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