View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16438_high_8 (Length: 418)
Name: NF16438_high_8
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 21112789 - 21112399
Alignment:
| Q |
18 |
tcaagcacatattggccaccatcttttttgttaagttggcaagctggaaggaccaattacaatagtactagaattgctttgttggattctcttggaaagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21112789 |
tcaagcacatattggccaccatcttttttgttaagttggcaagctggaaggaccaattacaatagtactagaattgctttgttggattctcttggaaagt |
21112690 |
T |
|
| Q |
118 |
tcatatcatctgataattacnnnnnnnccacatatgattatggtatggttatgcaaagaagattaaccttggattctgatggtaatattcgagtttacag |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21112689 |
tcatatcatctgataattactttttttccacatatgattatggtatggttatgcaaagaagattaaccttggattctgatggtaatattcgagtttacag |
21112590 |
T |
|
| Q |
218 |
ccgaaaaaacttgttagaaaattggtatgtttcatggcaagtcatatctgacacctgcatcatagatggaatttgtggtgcaaataccgcttgtagctat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21112589 |
ccgaaaaaacttgttagaaaattggtatgtttcatggcaagtcatatctgacacctgcatcatagatggaatttgtggtgcaaatagcgcttgtagctat |
21112490 |
T |
|
| Q |
318 |
gatcctaaaaaaggtaagaaatgctcttgtttgccggggtataaaatgaagaaccataatgattggtcttatggttgtgaacctacctttg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
21112489 |
gatcctaaaaaaggtaagaaatgctcttgtttgccggggtataaaatgaagaaccataatgattggtcttatggatgtgaacctacgtttg |
21112399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 21124183 - 21123801
Alignment:
| Q |
18 |
tcaagcacatattggccaccatcttttttgttaagttggcaagctggaaggaccaattacaatagtactagaattgctttgttggattctcttggaaagt |
117 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||||||| |||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
21124183 |
tcaagcacatattggccaccttctttgttactaagttggcaagttggaagatccaattacaatagtaccataattgctttgttggattctcttggaaagt |
21124084 |
T |
|
| Q |
118 |
tcatatcatctgataattacnnnnnnnccacatatgattatggtatggttatgcaaagaagattaaccttggattctgatggtaatattcgagtttacag |
217 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| |||||| |||||||||| |||||||||| || |
|
|
| T |
21124083 |
tcatatcatctgataattacactttttccacttatgattatggtatggttatgcaaagaaaattaaccatggattatgatggtaatgttcgagtttatag |
21123984 |
T |
|
| Q |
218 |
ccgaaaaaacttgttagaaaattggtatgtttcatggcaagtcatatctgacacctgcatcatagatggaatttgtggtgcaaataccgcttgtagctat |
317 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| | |||| |||||| |
|
|
| T |
21123983 |
tcgaaaaaacatgtcagaaaattggtatgtttcatggcaagtcatatctgacacttgcatcattcatggagtttgtggtgcaaatagcacttgcagctat |
21123884 |
T |
|
| Q |
318 |
gatcctaaaaaaggtaagaaatgctcttgtttgccggggtataaaatgaagaaccataatgattggtcttatggttgtgaacc |
400 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
21123883 |
gatcctaaaaagggtaagaaatgctcttgtttgccggggtataaagtgaagaaccatagtgatttctcttctggttgtgaacc |
21123801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 18659911 - 18659527
Alignment:
| Q |
18 |
tcaagcacatattggccaccatcttttttgttaagttggcaagctggaaggaccaattacaatagtactagaattgctttgttggattctcttggaaagt |
117 |
Q |
| |
|
||||| |||||||||||||| |||| |||||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
18659911 |
tcaagtacatattggccacctgctttattgttaagctggcaagctggaagatccaattacaatagtagtagaattgcattgttggattctcttggaaagt |
18659812 |
T |
|
| Q |
118 |
tcatatcatctgataattacnnnnnnnccacatatgattatggtatggttatgcaaagaagattaaccttggattctgatggtaatattcgagtttacag |
217 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
18659811 |
tcatatcatctgataattacattttttccacttatgattatggtatggtcatgcaaagaaaattaaccatggattctgatggtaatgttcgagtttacag |
18659712 |
T |
|
| Q |
218 |
ccgaaaaaacttgttagaaaattggtatgtttcatggcaagtcatatctgacacctgcatcatagatggaatttgtggtgcaaataccgcttgtagctat |
317 |
Q |
| |
|
||||||||||||| || ||||||| |||||||||||||||||||| ||||||| |||||||| ||||| ||||||||| ||||| | |||| |||||| |
|
|
| T |
18659711 |
tcgaaaaaacttgtcagcaaattggcatgtttcatggcaagtcatacctgacacttgcatcattcatggagtttgtggtgaaaatagcacttgcagctat |
18659612 |
T |
|
| Q |
318 |
gatcctaaaaaaggtaagaaatgctcttgtttgccggggtataaaatgaagaaccataatgattggtcttatggttgtgaaccta |
402 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
18659611 |
gatcctaaaaagggtaagaaatgctcttgtttgccagggtataaagtgaagaaccataatgatttctcttctggttgtgaaccta |
18659527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 21131749 - 21131366
Alignment:
| Q |
18 |
tcaagcacatattggccaccatcttttttgttaagttggcaagctggaaggaccaattacaatagtactagaattgctttgttggattctcttggaaagt |
117 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||| ||||||||||| |||||||||||||| |||||||||||| || |||||||||||||||| |
|
|
| T |
21131749 |
tcaagcacatattggccaccaccttggttgttaagttgggaagctggaaggttcaattacaatagtagtagaattgctttcttagattctcttggaaagt |
21131650 |
T |
|
| Q |
118 |
tcatatcatctgataattacnnnnnnnccacatatgattatggtatggttatgcaaagaagattaaccttggattctgatggtaatattcgagtttacag |
217 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| || | | |||||||||| ||||||||||| |||||||| |
|
|
| T |
21131649 |
tcatttcatctgataattacactttttccacatatgattatggcatggttatgcaaagaaggttgagcatggattctgacggtaatattcgtgtttacag |
21131550 |
T |
|
| Q |
218 |
ccgaaaaaacttgttagaaaattggtatgtttcatggcaagtcatatctgacacctgcatcatagatggaatttgtggtgcaaataccgcttgtagctat |
317 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||| || ||| | |||| |||| ||||||||||||| ||||| | | |||| | |||| |
|
|
| T |
21131549 |
tcgaaaaaacttgtcaaaaaattggtatgtttcatggcaagtcgtacatgatccttgcaccatacatggaatttgtggcgcaaacagctcttgcatctat |
21131450 |
T |
|
| Q |
318 |
gatcctaaaaaaggtaagaaatgctcttgtttgccggggtataaaatgaagaaccataatgattggtcttatggttgtgaacct |
401 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21131449 |
gatcctaatatgggtaaaaaatgctcttgtttgccaggatataaagtgaagaaccatagtgattggtcttatggttgtgaacct |
21131366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 402
Target Start/End: Original strand, 21097781 - 21097847
Alignment:
| Q |
336 |
aaatgctcttgtttgccggggtataaaatgaagaaccataatgattggtcttatggttgtgaaccta |
402 |
Q |
| |
|
|||||||||||| | || ||||||| |||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
21097781 |
aaatgctcttgtattccagggtatagaatgaacaatcctaatgattggtcttatggttgtgaaccta |
21097847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 402
Target Start/End: Original strand, 21107400 - 21107466
Alignment:
| Q |
336 |
aaatgctcttgtttgccggggtataaaatgaagaaccataatgattggtcttatggttgtgaaccta |
402 |
Q |
| |
|
||||| |||||| | || ||||||| | |||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
21107400 |
aaatgttcttgtattccagggtatagagtgaagaaccatagtgattggtcttatggttgtgagccta |
21107466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 39130987 - 39131371
Alignment:
| Q |
18 |
tcaagcacatattggccaccatcttttttgttaagttggcaagctggaaggaccaattacaatagtactagaattgctttgttggattctcttggaaagt |
117 |
Q |
| |
|
||||||||||||||||||||| | | |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
39130987 |
tcaagcacatattggccaccaccatggttgttaagttggcaagctggaaggttcaattataatagtagtagaattgctttgttggattctcatggaaagt |
39131086 |
T |
|
| Q |
118 |
tcatatcatctgataattacnnnnnnnccacatatgattatggtatggttatgcaaagaagattaaccttggattctgatggtaatattcgagtttacag |
217 |
Q |
| |
|
| || ||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
39131087 |
ttatttcatctgataattacattttttccacatatgattacggtacggttatgcaaagaagattaaccatggattctgatggtaatattcgtgtttacag |
39131186 |
T |
|
| Q |
218 |
ccgaaaaaacttgttagaaaattggtatgtttcatggcaagtcatatctgacacctgcatcatagatggaatttgtggtgcaaataccgcttgtagctat |
317 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||| || |||| ||| ||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
39131187 |
tcgaaaaagtttgttagaaaattggtatgtttcatggcaagtcatatatgatacatgcaccattcatggaatttgtggtgaaaatagcacttgtagctat |
39131286 |
T |
|
| Q |
318 |
gatcctaaaaaaggtaagaaatgctcttgtttgccggggtataaaatgaagaaccataatgattggtcttatggttgtgaaccta |
402 |
Q |
| |
|
|||| ||||| |||||||| || |||||||||| || |||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39131287 |
catccgaaaaagggtaagaagtgttcttgtttgcaaggatataaagtgaagaaccataatgattggtcttatggttgtgagccta |
39131371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University