View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_low_11 (Length: 403)
Name: NF16438_low_11
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 2 - 381
Target Start/End: Complemental strand, 33116502 - 33116123
Alignment:
| Q |
2 |
attaattactcaattaagaaataaaggtcctaaacttgaataccagcctccaaagtttcttcctcagcttcaccagaaatttcttccaaagattttcctt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116502 |
attaattactcaattaagaaataaaggtcctaaacttgaataccagcctccaaagtttcttcctcagcttcaccagaaatttcttccaaagattttcctt |
33116403 |
T |
|
| Q |
102 |
tagattcaggaaccaagaatgtaaacatcatccccaagaaattggccacacccaaaagcataagcacatttctcactccaattgcattttgagcatacaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33116402 |
tagattcaggaaccaagaatgtaaacatcatccccaagaaattggccacacccaaaagcagaagcacatttctcactccaattgcattttgagcatacaa |
33116303 |
T |
|
| Q |
202 |
gaaaccaaaagcacctaccattgctccagcttttccagcagcagcggatataccatgacatgttgaccttagccttgccgggaaaatctctgccggaacc |
301 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116302 |
gaaaccaaaagcacctaccattgctccagcttttccagcagcagcggatataccatgacatgttgaccttagccttgccgggaaaatctctgccggaacc |
33116203 |
T |
|
| Q |
302 |
acaaacgtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatttggtttcc |
381 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116202 |
acaaacgtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatttggtttcc |
33116123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 193 - 373
Target Start/End: Complemental strand, 16185170 - 16184990
Alignment:
| Q |
193 |
agcatacaagaaaccaaaagcacctaccattgctccagcttttccagcagcagcggatataccatgacatgttgaccttagccttgccgggaaaatctct |
292 |
Q |
| |
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|||||||||||| ||||| ||||| || |||||||| || ||||| |||||||| || || |||||||| || ||||||||||| ||||| ||||||||| |
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| T |
16185170 |
agcatacaagaatccaaatgcaccaacaattgctcctgcctttcctgcagcagctgagattccatgacaggtagaccttagcctagccggaaaaatctct |
16185071 |
T |
|
| Q |
293 |
gccggaaccacaaacgtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatt |
373 |
Q |
| |
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||||| || ||||| ||||| |||||||||||||||||||||||||||||||| | ||| ||||| |||||||| |||||| |
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| T |
16185070 |
gccggtacaacaaatgtcgtagcatttggaccaaaattagcaaagaagaatgtgagtgagtacattacaacaaacccaatt |
16184990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 193 - 373
Target Start/End: Original strand, 16174192 - 16174372
Alignment:
| Q |
193 |
agcatacaagaaaccaaaagcacctaccattgctccagcttttccagcagcagcggatataccatgacatgttgaccttagccttgccgggaaaatctct |
292 |
Q |
| |
|
|||||||||||| ||||| ||||| || |||||||| || ||||| |||||||| ||||| |||||||| || ||||||| ||| ||||| ||||||||| |
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| T |
16174192 |
agcatacaagaatccaaatgcaccaacaattgctcctgcctttcctgcagcagctgatattccatgacaggtagaccttaacctagccggaaaaatctct |
16174291 |
T |
|
| Q |
293 |
gccggaaccacaaacgtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatt |
373 |
Q |
| |
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||||| || ||||| || || |||||||||||||||||||||||||||||||| | ||| ||||| |||||||| |||||| |
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| T |
16174292 |
gccggtacaacaaatgttgtagcatttggaccaaaattagcaaagaagaatgttagtgagtacattacaacaaacccaatt |
16174372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 193 - 373
Target Start/End: Complemental strand, 16224560 - 16224380
Alignment:
| Q |
193 |
agcatacaagaaaccaaaagcacctaccattgctccagcttttccagcagcagcggatataccatgacatgttgaccttagccttgccgggaaaatctct |
292 |
Q |
| |
|
|||||||||||| ||||| ||||| || |||||||| || ||||| |||||||| || || |||||||| || ||||||| ||| ||||| ||||||||| |
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| T |
16224560 |
agcatacaagaatccaaatgcaccaacaattgctcctgcctttcctgcagcagctgagattccatgacaggtagaccttaacctagccggaaaaatctct |
16224461 |
T |
|
| Q |
293 |
gccggaaccacaaacgtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatt |
373 |
Q |
| |
|
||||| || ||||| ||||| |||||||||||||||||||||||||||||||| | ||| || || |||||||| |||||| |
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| T |
16224460 |
gccggtacaacaaatgtcgtagcatttggaccaaaattagcaaagaagaatgtgagtgagtatattacaacaaacccaatt |
16224380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 373
Target Start/End: Complemental strand, 33110270 - 33110090
Alignment:
| Q |
193 |
agcatacaagaaaccaaaagcacctaccattgctccagcttttccagcagcagcggatataccatgacatgttgaccttagccttgccgggaaaatctct |
292 |
Q |
| |
|
|||||| || || ||||| ||||| || ||||||||||| ||||| |||||||| || || || ||||| || || || |||||||||||||||||||| |
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| T |
33110270 |
agcatataaaaatccaaatgcaccaacaattgctccagcctttcctgcagcagctgagattccgtgacaggtagatctaagccttgccgggaaaatctcg |
33110171 |
T |
|
| Q |
293 |
gccggaaccacaaacgtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatt |
373 |
Q |
| |
|
|| ||||| ||||| || || ||||||||||| ||||| ||||| ||||| || ||||| ||||| |||||||| |||||| |
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| T |
33110170 |
gctggaacaacaaatgtggtagcatttggaccgaaattggcaaaaaagaaagttaatgagtacattacaacaaacccaatt |
33110090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 193 - 373
Target Start/End: Original strand, 37314775 - 37314955
Alignment:
| Q |
193 |
agcatacaagaaaccaaaagcacctaccattgctccagcttttccagcagcagcggatataccatgacatgttgaccttagccttgccgggaaaatctct |
292 |
Q |
| |
|
|||||| ||||| ||||| ||||||| |||||||||||||| || || |||| |||||||||||||||||| ||||| | ||| |||||||||||||| |
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| T |
37314775 |
agcatataagaatccaaatgcacctataattgctccagctttccctgctgcagaggatataccatgacatgtagacctcaacctagccgggaaaatctcg |
37314874 |
T |
|
| Q |
293 |
gccggaaccacaaacgtcgttgcatttggaccaaaattagcaaagaagaatgtcaatgaatacatgacaacaaaaccaatt |
373 |
Q |
| |
|
|| || || ||||| || |||| ||||||||||||||| |||||||| || |||| || ||||| |||| ||| |||||| |
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| T |
37314875 |
gcaggtacaacaaaagtggttgaatttggaccaaaatttgcaaagaaaaaagtcattgcgtacataacaagaaatccaatt |
37314955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 28816639 - 28816730
Alignment:
| Q |
206 |
ccaaaagcacctaccattgctccagcttttccagcagcagcggatataccatgacatgttgaccttagccttgccgggaaaatctctgccgg |
297 |
Q |
| |
|
||||||||||| || || ||||| | ||||||||| ||||||||||| ||||||||||| || | |||||||| || || | ||||||||| |
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|
| T |
28816639 |
ccaaaagcaccgactatagctcctgattttccagctgcagcggatatcccatgacatgtcgaacggagccttgcaggaaacagctctgccgg |
28816730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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