View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_low_12 (Length: 403)
Name: NF16438_low_12
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 383
Target Start/End: Complemental strand, 52698994 - 52698627
Alignment:
| Q |
16 |
aatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaaga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698994 |
aatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaaga |
52698895 |
T |
|
| Q |
116 |
aacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698894 |
aacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatg |
52698795 |
T |
|
| Q |
216 |
caaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698794 |
caaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaa |
52698695 |
T |
|
| Q |
316 |
agagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaacac |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698694 |
agagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaacac |
52698627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 16 - 372
Target Start/End: Complemental strand, 52721634 - 52721278
Alignment:
| Q |
16 |
aatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaaga |
115 |
Q |
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||||||||||| |||||| |||||||||||||||| || |||||||||||| || |||||| |||||||||||| | || |||||||||||||||||| |
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| T |
52721634 |
aatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctacggaaactccttttcgatgtttcttgacggaggctacaataacctgaaga |
52721535 |
T |
|
| Q |
116 |
aacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatg |
215 |
Q |
| |
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|||||||| || |||||||||||||| ||||||||||| |||||| ||| |||| | || | | ||||||||||| || | ||||||||||||||| | |
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| T |
52721534 |
aacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtgggtattc |
52721435 |
T |
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| Q |
216 |
caaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaa |
315 |
Q |
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|||||||||||| |||||||| || | |||| ||||||||||| || ||||||||||| | |||||||||||| |||||| |||||||||||||||| |
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| T |
52721434 |
caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccatgttgatagcaaagaaaaaccaattaaagaa |
52721335 |
T |
|
| Q |
316 |
agagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaa |
372 |
Q |
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|| | ||||| ||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
52721334 |
agcgtatttctgttggacttctttttcatctccctcgtcaaattggtctgctccaaa |
52721278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 372
Target Start/End: Complemental strand, 52712813 - 52712457
Alignment:
| Q |
16 |
aatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaaga |
115 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||||| || ||||||||||| |||||||||| | |||||||||| | || |||||||||||||||||| |
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| T |
52712813 |
aatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaaga |
52712714 |
T |
|
| Q |
116 |
aacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatg |
215 |
Q |
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|||||||| || |||||||||||||| ||||| ||||| |||||| ||| ||| | || | | ||||||||||| || ||||||||||||||| | | |
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| T |
52712713 |
aacctagtaaaagggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgtagttattgtgggaattc |
52712614 |
T |
|
| Q |
216 |
caaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaa |
315 |
Q |
| |
|
|||||||||||| |||||||| || | |||| ||||||||||| || ||||||||||| |||||||||||||| |||||| |||||||||||||||| |
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| T |
52712613 |
caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaa |
52712514 |
T |
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| Q |
316 |
agagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaa |
372 |
Q |
| |
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|| | ||||| |||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
52712513 |
agcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaa |
52712457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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