View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16438_low_13 (Length: 402)

Name: NF16438_low_13
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16438_low_13
NF16438_low_13
[»] chr3 (2 HSPs)
chr3 (19-390)||(47846420-47846788)
chr3 (195-247)||(14778734-14778786)
[»] chr1 (2 HSPs)
chr1 (160-291)||(4686087-4686218)
chr1 (183-225)||(38720066-38720108)
[»] chr4 (1 HSPs)
chr4 (183-251)||(40253987-40254055)
[»] chr2 (1 HSPs)
chr2 (182-244)||(40819427-40819489)
[»] chr7 (2 HSPs)
chr7 (189-225)||(13297808-13297844)
chr7 (194-230)||(33928495-33928531)
[»] chr5 (1 HSPs)
chr5 (183-247)||(5113879-5113943)


Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Complemental strand, 47846788 - 47846420
Alignment:
Q  19 tatgttactattggaagcaggtaagtgtactatgtatatatcaattttagtgacaacaacatgtatttaatctgaaatatcggtgtataaagcaaaacaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47846788 tatgttactattggaagcaggtaagtgtactatgtatatatcaattttagtgacaacaacatgtatttaatctgaaatatcggtgtataaagcaaaacaa 47846689  T
Q  119 ttatgcttattaatttcggtttaatttgtttgatgccgcgcgcagatggtcggtgattgcgggtcaattgccgggaagaaccgataatgatataaagaac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47846688 ttatgcttattaatttcggtttaatttgtttgatgccgcgcgcagatggtcggtgattgcgggtcaattgcccggaagaaccgataatgatataaagaac 47846589  T
Q  219 tattggaacacaaaactgaaaaagaagcttttagggaagcatcgtaaagaacaacaattacaagcacgtaataaattattagctagtgctaatcatgaga 318  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47846588 tattggaacacaaaactgaaaaagaagctttttgggaagcatcgtaaagaacaacaattacaagcacgtaataaattattagctagtgctaatcatgaga 47846489  T
Q  319 gcaatggaagaaggagtgatcagaattcttcatctaatttaatttctgatcaacatattttacaaccatatt 390  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47846488 gcaatggaagaaggagtg---agaattcttcatctaatttaatttctgatcaacatattttacaaccatatt 47846420  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 14778786 - 14778734
Alignment:
Q  195 agaaccgataatgatataaagaactattggaacacaaaactgaaaaagaagct 247  Q
    ||||| || |||||| | |||||| ||||||||||||| ||||||||||||||    
T  14778786 agaacagacaatgatgttaagaacaattggaacacaaagctgaaaaagaagct 14778734  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 160 - 291
Target Start/End: Original strand, 4686087 - 4686218
Alignment:
Q  160 gcagatggtcggtgattgcgggtcaattgccgggaagaaccgataatgatataaagaactattggaacacaaaactgaaaaagaagcttttagggaagca 259  Q
    |||| |||||| | ||||| | ||||||||| |||||||| |||||||| ||||||||||||||||| ||||   |||||||||||||||| ||||| ||    
T  4686087 gcaggtggtcgataattgcagctcaattgccaggaagaactgataatgacataaagaactattggaatacaaggttgaaaaagaagcttttggggaaaca 4686186  T
Q  260 tcgtaaagaacaacaattacaagcacgtaata 291  Q
     |||||||| ||||||  ||||||||||||||    
T  4686187 ccgtaaagatcaacaacaacaagcacgtaata 4686218  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 38720066 - 38720108
Alignment:
Q  183 caattgccgggaagaaccgataatgatataaagaactattgga 225  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||    
T  38720066 caattaccgggaagaaccgacaatgaaataaagaactattgga 38720108  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 40254055 - 40253987
Alignment:
Q  183 caattgccgggaagaaccgataatgatataaagaactattggaacacaaaactgaaaaagaagctttta 251  Q
    ||||| || ||| |||| ||||||||||||||||||||||||||||||||  |||| ||||| ||||||    
T  40254055 caattaccaggacgaacggataatgatataaagaactattggaacacaaagttgaagaagaaactttta 40253987  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 40819489 - 40819427
Alignment:
Q  182 tcaattgccgggaagaaccgataatgatataaagaactattggaacacaaaactgaaaaagaa 244  Q
    |||||| || |||||||| ||||||||||| || ||||| |||||||||||||| || |||||    
T  40819489 tcaattaccaggaagaactgataatgatatcaaaaactactggaacacaaaactaaagaagaa 40819427  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 13297808 - 13297844
Alignment:
Q  189 ccgggaagaaccgataatgatataaagaactattgga 225  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  13297808 ccgggaagaaccgataatgagataaagaactactgga 13297844  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 33928531 - 33928495
Alignment:
Q  194 aagaaccgataatgatataaagaactattggaacaca 230  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  33928531 aagaacagataatgatataaagaattattggaacaca 33928495  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 5113879 - 5113943
Alignment:
Q  183 caattgccgggaagaaccgataatgatataaagaactattggaacacaaaactgaaaaagaagct 247  Q
    ||||| || ||| |||| |||||||||||||||||||| |||||||| |  ||||| ||||||||    
T  5113879 caattaccaggacgaacggataatgatataaagaactactggaacactaggctgaagaagaagct 5113943  T

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