View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_low_15 (Length: 371)
Name: NF16438_low_15
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 1807706 - 1807364
Alignment:
| Q |
19 |
acttaaaccttgatttaatgattgtgtctgcattgttattgtgcactactacaatgactcaatctccaccttcattgccaaggaagacattatcagtcgt |
118 |
Q |
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| T |
1807706 |
acttaaaccttgatttaatgattgtgtctgcattgttattgtgcactactacaatgactcaatctccaccttcattgccaaggaagacattatcagtcgt |
1807607 |
T |
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| Q |
119 |
ctatcgatcaacagcggattcaccgtccaccggaagttctcctcttgaaccatcagcagcttctccttcaccatctgatcatccacaacaaccagctgat |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1807606 |
ctatcgatcaacggcggattcaccgtccaccggaagttctcctcttgaaccatcagcagcttctccttcaccatctgatcatccacaacaaccagctgat |
1807507 |
T |
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| Q |
219 |
gaccaacaaagtgtgttaccatttatacatggcattcagattttcttggcaatctatttaagtattttatgtttgttgataattgtggtaatggtctttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1807506 |
gaccaacaaagtgtgttaccatttatacatggcattcagattttcttggcaatctatttaagtattttatgtttgttgataattgtggtaatggtctttc |
1807407 |
T |
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| Q |
319 |
tcttgtttctatttgtaaaatatattcgaagccgctgcctttg |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1807406 |
tcttgtttctatttgtaaaatatattcgaagccgctgcctttg |
1807364 |
T |
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