View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16438_low_17 (Length: 370)

Name: NF16438_low_17
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16438_low_17
NF16438_low_17
[»] chr4 (3 HSPs)
chr4 (9-370)||(47331405-47331766)
chr4 (199-273)||(41922020-41922094)
chr4 (62-125)||(36984031-36984094)
[»] chr3 (4 HSPs)
chr3 (188-271)||(621996-622079)
chr3 (189-272)||(16118500-16118583)
chr3 (178-292)||(48847650-48847765)
chr3 (202-290)||(45675751-45675839)
[»] chr6 (3 HSPs)
chr6 (188-289)||(32312798-32312899)
chr6 (173-270)||(5642567-5642663)
chr6 (233-273)||(6368800-6368840)
[»] chr5 (4 HSPs)
chr5 (172-291)||(15150772-15150891)
chr5 (180-253)||(38153350-38153423)
chr5 (199-272)||(37060345-37060418)
chr5 (180-276)||(15156555-15156650)
[»] chr7 (3 HSPs)
chr7 (179-247)||(10201384-10201452)
chr7 (179-240)||(27933540-27933601)
chr7 (241-292)||(36424272-36424323)
[»] chr1 (2 HSPs)
chr1 (180-290)||(43292712-43292822)
chr1 (189-258)||(30192240-30192309)
[»] scaffold0095 (1 HSPs)
scaffold0095 (199-292)||(37830-37923)
[»] scaffold0065 (1 HSPs)
scaffold0065 (189-286)||(49533-49630)
[»] chr8 (2 HSPs)
chr8 (199-292)||(39396878-39396971)
chr8 (199-270)||(41146144-41146215)


Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 370
Target Start/End: Original strand, 47331405 - 47331766
Alignment:
Q  9 acatcatcacaaaataaaatttcatcgattgtttggatctctaagtatcaattaggagttgaaatgaaacacatgaactctggttgacgtgccacttatc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47331405 acatcatcacaaaataaaatttcatcgattgtttggatctctaagtatcaattaggagttgaaatgaaacacatgaactctggttgacgtgccacttatc 47331504  T
Q  109 cctctgattcatgatattgaaataatactcttgttagtttgtgtttggttccaagtttgcacatcaatacatttttactgtgatttctaaaagcttcaaa 208  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47331505 cctctgattcatgaaattgaaataatactcttattagtttgtgtttggttccaagtttgcacatcgatacatttttactgtgatttctaaaagcttcaaa 47331604  T
Q  209 tactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgcagtactaaatagacacttaaagatggtgttggttag 308  Q
    |||||||||||| |||||||||||||||||||||||||||||||| | | |||||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  47331605 tactagcttctatgataatgtgattttttgccgtgattttcatcaaattgtgttttacaaacacagtattaaacagacacttaaagatggtgttggttag 47331704  T
Q  309 gatatacaaatgaaactcttaataaaggtgaatgttggtccatagcttgtggagaaggtgtt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47331705 gatatacaaatgaaactcttaataaaggtgaatgttggtccatagcttgtggagaaggtgtt 47331766  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 41922020 - 41922094
Alignment:
Q  199 aagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgca 273  Q
    ||||| |||||||||||||||| | ||| ||| ||||||||||||||||  |||| |||| ||||| ||||||||    
T  41922020 aagctccaaatactagcttctaggttaacgtggttttttgccgtgatttctatcaaactccgtttttcaaacgca 41922094  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 36984031 - 36984094
Alignment:
Q  62 aggagttgaaatgaaacacatgaactctggttgacgtgccacttatccctctgattcatgatat 125  Q
    |||||||| ||||||| || ||||||||||||||||||||  | |||| |||||| ||||||||    
T  36984031 aggagttggaatgaaatacgtgaactctggttgacgtgcccatgatccatctgatccatgatat 36984094  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 622079 - 621996
Alignment:
Q  188 gtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacg 271  Q
    ||||||| |||||||| |||||||||||||||||| ||| ||| |||||||| ||||||||||||| ||||| |||| ||||||    
T  622079 gtgatttttaaaagctccaaatactagcttctacgttaacgtggttttttgctgtgattttcatcaaactctattttgcaaacg 621996  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 16118583 - 16118500
Alignment:
Q  189 tgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgc 272  Q
    ||||||| ||||||| |||||||||||||||||| ||| ||| ||||||| |||||||| ||||| | ||| |||| |||||||    
T  16118583 tgatttccaaaagctccaaatactagcttctacgctaacgtggttttttgtcgtgatttccatcaaattctattttgcaaacgc 16118500  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 292
Target Start/End: Original strand, 48847650 - 48847765
Alignment:
Q  178 catttttactgtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttca-tcagactctgttttacaaacgcagta 276  Q
    ||||||| | |||||||  | ||||||||||||||| ||||  || ||| ||| |||||||||||||||| || ||| |||||||||| ||||||| |||    
T  48847650 catttttgccgtgattttcacaagcttcaaatactaacttcctcgctaacgtggttttttgccgtgatttccattcaaactctgtttttcaaacgctgta 48847749  T
Q  277 ctaaatagacacttaa 292  Q
    | ||| ||||||||||    
T  48847750 ccaaacagacacttaa 48847765  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 290
Target Start/End: Original strand, 45675751 - 45675839
Alignment:
Q  202 cttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgcagtactaaatagacactt 290  Q
    |||||||||||| |||||||| ||| ||| |||||| |||||||||  |||| |||| ||||| |||| ||| ||| ||| ||||||||    
T  45675751 cttcaaatactaacttctacgctaacgtggttttttaccgtgatttctatcaaactccgtttttcaaaagcaataccaaacagacactt 45675839  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 188 - 289
Target Start/End: Complemental strand, 32312899 - 32312798
Alignment:
Q  188 gtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgcagtactaaatagaca 287  Q
    |||||||| ||||||| || ||||||||||||||| |||  || |||||||||||||||| ||||| | || ||||| ||||||| |||| |||||||||    
T  32312899 gtgatttccaaaagctccagatactagcttctacgctaacatggttttttgccgtgatttccatcaaagtccgttttgcaaacgccgtaccaaatagaca 32312800  T
Q  288 ct 289  Q
    ||    
T  32312799 ct 32312798  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 5642663 - 5642567
Alignment:
Q  173 caatacatttttactgtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaac 270  Q
    ||||| ||||||||  ||||||| | ||| ||||||||||| |||||||| ||  |||| |||||| |||||||||||| | |||| |||||||||||    
T  5642663 caatatatttttaccatgatttccagaagtttcaaatactaacttctacgctagcgtga-tttttgtcgtgattttcattaaactccgttttacaaac 5642567  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 6368800 - 6368840
Alignment:
Q  233 tttttgccgtgattttcatcagactctgttttacaaacgca 273  Q
    ||||||||||||||||||||| |||| ||||| ||||||||    
T  6368800 tttttgccgtgattttcatcaaactccgttttgcaaacgca 6368840  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 172 - 291
Target Start/End: Complemental strand, 15150891 - 15150772
Alignment:
Q  172 tcaatacatttttactgtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacg 271  Q
    ||||| ||||||| | || ||||||||||| ||||||||||| |||||| | ||| ||| || |||| |||||||||||||| || || |||| ||||||    
T  15150891 tcaatgcatttttgccgtaatttctaaaagtttcaaatactaacttctatgctaacgtggttgtttgtcgtgattttcatcaaaccctatttttcaaacg 15150792  T
Q  272 cagtactaaatagacactta 291  Q
    |  ||| |||||||||||||    
T  15150791 ctctaccaaatagacactta 15150772  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 38153423 - 38153350
Alignment:
Q  180 tttttactgtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatca 253  Q
    ||||| |||||||||  | |||||||||||||||||||| ||| |||  |||||||||||||||| ||||||||    
T  38153423 tttttgctgtgatttgcagaagcttcaaatactagcttccacgttaaactgattttttgccgtgactttcatca 38153350  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 37060345 - 37060418
Alignment:
Q  199 aagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgc 272  Q
    ||||| ||||||||| |||||||  |||  ||||||||||||||||||| ||||  |||||||||| |||||||    
T  37060345 aagctccaaatactaacttctacattaacatgattttttgccgtgatttccatccaactctgttttgcaaacgc 37060418  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 15156555 - 15156650
Alignment:
Q  180 tttttactgtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgcagta 276  Q
    ||||| |||||||||||| || ||  |||||||| |||||||| |||  ||||||||||| || |||| ||||| |||| ||||| |||||||||||    
T  15156555 tttttgctgtgatttctagaaactcgaaatacta-cttctacgttaacatgattttttgctgtaatttccatcaaactcggttttgcaaacgcagta 15156650  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 10201452 - 10201384
Alignment:
Q  179 atttttactgtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattt 247  Q
    |||||| |||||||||| ||||||| |||||||||||||||||| ||| |||||||||||  |||||||    
T  10201452 atttttgctgtgatttccaaaagctccaaatactagcttctacgctaacgtgattttttgttgtgattt 10201384  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 27933540 - 27933601
Alignment:
Q  179 atttttactgtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgcc 240  Q
    |||||||| |||||||  | |||||  ||||||||||||||||| |||||||||||||||||    
T  27933540 atttttaccgtgattttcagaagctctaaatactagcttctacgctaatgtgattttttgcc 27933601  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 36424272 - 36424323
Alignment:
Q  241 gtgattttcatcagactctgttttacaaacgcagtactaaatagacacttaa 292  Q
    ||||||||||||| |||||||||| |||| ||||||| ||| ||||||||||    
T  36424272 gtgattttcatcaaactctgttttgcaaatgcagtaccaaacagacacttaa 36424323  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 290
Target Start/End: Complemental strand, 43292822 - 43292712
Alignment:
Q  180 tttttactgtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgcagtacta 279  Q
    ||||||| |||||||  | ||||| ||||||||| ||| |||| |||  || |||||| ||||||||| ||||| ||||||||| |||||||| |  |||    
T  43292822 tttttaccgtgattttcagaagctccaaatactaacttttacgttaacatggttttttaccgtgatttccatcaaactctgtttgacaaacgccgagcta 43292723  T
Q  280 aatagacactt 290  Q
    |||||||||||    
T  43292722 aatagacactt 43292712  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 30192309 - 30192240
Alignment:
Q  189 tgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactc 258  Q
    ||||||||||| ||| |||||||||||||||||  || || | |||||||||||||||||||||| ||||    
T  30192309 tgatttctaaatgctccaaatactagcttctacactactgcggttttttgccgtgattttcatcaaactc 30192240  T

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Target: scaffold0095 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 292
Target Start/End: Complemental strand, 37923 - 37830
Alignment:
Q  199 aagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgcagtactaaatagacacttaa 292  Q
    ||||| |||||||||||||||  | ||| ||| |||||||||||||||| ||||  || ||||||| ||||||| ||| |||| | ||||||||    
T  37923 aagctccaaatactagcttctttgctaacgtggttttttgccgtgatttccatcgaacactgttttgcaaacgctgtattaaacaaacacttaa 37830  T

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Target: scaffold0065 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 286
Target Start/End: Original strand, 49533 - 49630
Alignment:
Q  189 tgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgcagtactaaatagac 286  Q
    |||| |||| |||||  |||||||| |||||||| | |  || ||||||| |||||||||||| | |||| ||||| ||||||| |||||||||||||    
T  49533 tgatctctagaagctctaaatactaacttctacgcttacatggttttttgtcgtgattttcattaaactccgttttgcaaacgctgtactaaatagac 49630  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 292
Target Start/End: Original strand, 39396878 - 39396971
Alignment:
Q  199 aagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgcagtactaaatagacacttaa 292  Q
    ||||| |||||||||||||||  | ||| ||| |||||||||||||||| ||||  || ||||||| ||||||| ||| |||| | ||||||||    
T  39396878 aagctccaaatactagcttctttgctaacgtggttttttgccgtgatttccatcgaacactgttttgcaaacgctgtattaaacaaacacttaa 39396971  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 41146215 - 41146144
Alignment:
Q  199 aagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaac 270  Q
    ||||| |||||||||| ||||||| ||| ||| ||||||||||||||||  |||| |||| ||||| |||||    
T  41146215 aagctccaaatactagtttctacgttaacgtggttttttgccgtgatttctatcaaactccgttttgcaaac 41146144  T

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