View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_low_18 (Length: 361)
Name: NF16438_low_18
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_low_18 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 3093036 - 3093390
Alignment:
| Q |
7 |
agggcatacttgaatcatgggactaagaatgagatcatagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaattggagcagcac |
106 |
Q |
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| T |
3093036 |
agggcatacttgaatcatgggactaagaatgagatcatagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaattggagcagcac |
3093135 |
T |
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| Q |
107 |
atcaccttaagcaacataacatcagtgtagtgttacatcaaccatttgtaggacaaggaatgtcagataacccaatgaactctgtttatgtcccatctcc |
206 |
Q |
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| T |
3093136 |
atcaccttaagcaacataacatcagtgtagtgttacatcaaccatttgtaggacaaggaatgtcagataacccaatgaactctgtttatgtcccatctcc |
3093235 |
T |
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| Q |
207 |
ttctccggtagaggtttccctcatttctgttgttggcattaccagctttggcagctatattgaagccgctagcggcgcaccattcaccggttctcagaga |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
3093236 |
ttctccggtagaggtttccctcatttctgttgttggcattaccagctttggcagctatattgaagccgctagcggcgcaacattcaccggttctcaaaga |
3093335 |
T |
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| Q |
307 |
gacttcggaatgttttgtcccgaggtacattttaaaatttgtggtcgatttaaat |
361 |
Q |
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| T |
3093336 |
gacttcggaatgttttctcccgaggtacattttaaaatttgtgttcgatctaaat |
3093390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 3084156 - 3084423
Alignment:
| Q |
7 |
agggcatacttgaatcatgggactaagaatgagatcatagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaattggagcagcac |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3084156 |
agggcatacttgaatcatgggactaagaatgagatcatagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaattggagcaggac |
3084255 |
T |
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| Q |
107 |
atcaccttaagcaacataacatcagtgtagtgttacatcaaccatttgtaggacaaggaatgtcagataacccaatgaactctgtttatgtcccatctcc |
206 |
Q |
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||||||||| | |||| |||||||||||||||||| ||||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| |
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| T |
3084256 |
atcaccttagggaacacaacatcagtgtagtgttagatcaacctttggtaggacaaggaatgtcagataatccaatgaacgctgtttatgtcccgtctcc |
3084355 |
T |
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| Q |
207 |
ttctccggtagaggtttccctcatttctgttgttggcattaccagctttggcagctatattgaagccg |
274 |
Q |
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||| || |||||||| ||||||||||| |||||||||||||||| ||| |||||||| |||||||||| |
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| T |
3084356 |
ttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggcagctacattgaagccg |
3084423 |
T |
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