View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_low_2 (Length: 530)
Name: NF16438_low_2
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 5e-88; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 315 - 511
Target Start/End: Original strand, 32894048 - 32894242
Alignment:
| Q |
315 |
ggttgattttcttccaaatattaagtctattaaactcttttaactttgtccactctcagttcatacttcatagtctgtagaacaactaacttgttccata |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
32894048 |
ggttgattttcttccaaatattaagtctattaaactcttt-aactttgtccactctcagttcatacttcataatctgcagaacaactaacttgttccata |
32894146 |
T |
|
| Q |
415 |
ttaaaggcatgacatattcaagtggttcaccacaagaatcatagaattccgtaagacttgtgtaggtgtgaagattaatgcttctgatagaatctac |
511 |
Q |
| |
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| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32894147 |
tcaaaggcatgacat-ttcaagtggttcaccacaagaatcatagaattccataagacttgtgtaggtgtgaagattaatgcttctgatagaatctac |
32894242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 315 - 511
Target Start/End: Original strand, 49346549 - 49346743
Alignment:
| Q |
315 |
ggttgattttcttccaaatattaagtctattaaactcttttaactttgtccactctcagttcatacttcatagtctgtagaacaactaacttgttccata |
414 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
49346549 |
ggttgattttcttccaaatatcaagtctattaaactcttt-aactttgtccactctcagttcatacttcataatctgcagaacaactaacttgttccata |
49346647 |
T |
|
| Q |
415 |
ttaaaggcatgacatattcaagtggttcaccacaagaatcatagaattccgtaagacttgtgtaggtgtgaagattaatgcttctgatagaatctac |
511 |
Q |
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| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49346648 |
tcaaaggcatgacat-ttcaagtggttcaccacaagaatcatagaattccgtaagacttgtgtaggtgtgaagattaatgcttctgatagaatctac |
49346743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 32893903 - 32894017
Alignment:
| Q |
168 |
ctcaaccacaccaagaacataacaaactcagatctggaatttcatgaaagaacaaatttgttggtcnnnnnnnagaataaaatatactaaaaagcattga |
267 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| |
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| T |
32893903 |
ctcaaccacaccaagaacataataaactcagatctggaatttcatgaaagaacaaatttgttggtctttttttagaataaaatatactgaaaaacattga |
32894002 |
T |
|
| Q |
268 |
tgatgaatgtggtag |
282 |
Q |
| |
|
||||||||||||||| |
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|
| T |
32894003 |
tgatgaatgtggtag |
32894017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 49346405 - 49346519
Alignment:
| Q |
168 |
ctcaaccacaccaagaacataacaaactcagatctggaatttcatgaaagaacaaatttgttggtcnnnnnnnagaataaaatatactaaaaagcattga |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| |
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| T |
49346405 |
ctcaaccacaccaagaacataacaaactcagatctgaaatttcatgaaagaacaaatttgttggtctttttttagaataaaatatactgaaaaacattga |
49346504 |
T |
|
| Q |
268 |
tgatgaatgtggtag |
282 |
Q |
| |
|
||||||||||||||| |
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|
| T |
49346505 |
tgatgaatgtggtag |
49346519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 315 - 511
Target Start/End: Original strand, 17947284 - 17947478
Alignment:
| Q |
315 |
ggttgattttcttccaaatattaagtctattaaactcttttaactttgtccactctcagttcatacttcatagtctgtagaacaactaacttgttccata |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
17947284 |
ggttgattttcttccaaatattaagtctattaaactcttt-aactttgtccactctcagttcatacttcataatctgtagaacaactaacttgttccata |
17947382 |
T |
|
| Q |
415 |
ttaaaggcatgacatattcaagtggttcaccacaagaatcatagaattccgtaagacttgtgtaggtgtgaagattaatgcttctgatagaatctac |
511 |
Q |
| |
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| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17947383 |
tcaaaggcatgacat-ttcaagtggttcaccacaagaatcatagaattccgtaattcttgtgtaggtgtgaagattaatacttctgatagaatctac |
17947478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 17947140 - 17947254
Alignment:
| Q |
168 |
ctcaaccacaccaagaacataacaaactcagatctggaatttcatgaaagaacaaatttgttggtcnnnnnnnagaataaaatatactaaaaagcattga |
267 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| |
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|
| T |
17947140 |
ctcaaccacaccaagaacataataaactcagatctggaatttcatgaaagaacaaatttgttggtctttttttagaataaaatatactgaaaaacattga |
17947239 |
T |
|
| Q |
268 |
tgatgaatgtggtag |
282 |
Q |
| |
|
||||||||||||||| |
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|
| T |
17947240 |
tgatgaatgtggtag |
17947254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 55 - 282
Target Start/End: Complemental strand, 2523263 - 2523037
Alignment:
| Q |
55 |
taataggc-cccatagcttaggagcttcagctgccatgaatcataatcccttgtccagatctaatcttcaaacggattaaatagatagagacataataat |
153 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||| |||| ||||| ||||| |||||||||||||||||| | |||||| |||||||||| ||||| |
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|
| T |
2523263 |
taataggcacccattgcttaggagcttcagctaccataaatcctaatcacttgttcagatctaatcttcaaacatactaaatacatagagacattataat |
2523164 |
T |
|
| Q |
154 |
caacacattgatagctcaaccacaccaagaacataacaaactcagatctggaatttcatgaaagaacaaatttgttggtc-nnnnnnnagaataaaatat |
252 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||| |
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| T |
2523163 |
caacgcat--caagctcaaccacaccaagaacataacaaactcagatctggaa-ttcatgaaaggacaaatttgttggtcttttttttagaataaaataa |
2523067 |
T |
|
| Q |
253 |
actaaaaagcattgatgatgaatgtggtag |
282 |
Q |
| |
|
| ||||| |||||||||||||||||||||| |
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|
| T |
2523066 |
aataaaatgcattgatgatgaatgtggtag |
2523037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 321 - 508
Target Start/End: Original strand, 37876187 - 37876370
Alignment:
| Q |
321 |
ttttcttccaaatattaagtctattaaactcttttaactttgtccactctcagttcatacttcatagtctgtagaa-caactaacttgttccatattaaa |
419 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| | ||||||| |||||| ||||||| || || |||| || |||||||||||||||||||| |
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|
| T |
37876187 |
ttttcttccaaatgttaagtctgttaaactctttca-ctttgtctactctcggttcatagtt-------tgcagaaacagctaacttgttccatattaaa |
37876278 |
T |
|
| Q |
420 |
ggcatgacatattcaagtggttcaccacaaga---atcatagaattccgtaagacttgtgtaggtgtgaagattaatgcttctgatagaatc |
508 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||| | | |||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
37876279 |
ggcatggtatattcaagtggttcaccacaagaatcatcatagaatttctttagacttgtgtaggtgtgaagattaatgcttctaacagaatc |
37876370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 470
Target Start/End: Complemental strand, 2522962 - 2522861
Alignment:
| Q |
369 |
ctcagttcatacttcatagtctgtagaacaactaacttgttccatattaaaggcatgacatattcaagtggttcaccacaagaatcatagaattccgtaa |
468 |
Q |
| |
|
||||||||||||||||| || || | || | |||||||||||||||||||||||| |||||| || ||||||||| ||||||||| ||||||||| ||| |
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|
| T |
2522962 |
ctcagttcatacttcattgtttgcaaaaacagtaacttgttccatattaaaggcatcacatatccatgtggttcactacaagaatcgtagaattccttaa |
2522863 |
T |
|
| Q |
469 |
ga |
470 |
Q |
| |
|
|| |
|
|
| T |
2522862 |
ga |
2522861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 511
Target Start/End: Original strand, 37860175 - 37860219
Alignment:
| Q |
467 |
aagacttgtgtaggtgtgaagattaatgcttctgatagaatctac |
511 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | ||||||||| |
|
|
| T |
37860175 |
aagacttgtgtgtgtgtgaagattaatgcttctcacagaatctac |
37860219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 35153886 - 35153924
Alignment:
| Q |
159 |
cattgatagctcaaccacaccaagaacataacaaactca |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
35153886 |
cattgatagctcaaccacaccaagaacatcaaaaactca |
35153924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 53981122 - 53981084
Alignment:
| Q |
159 |
cattgatagctcaaccacaccaagaacataacaaactca |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
53981122 |
cattgatagctcaaccacaccaagaacatcaaaaactca |
53981084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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