View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_low_23 (Length: 322)
Name: NF16438_low_23
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_low_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 51805812 - 51805507
Alignment:
| Q |
17 |
aaactcaatctttgggaattaccaaaaagctttgtaagattgaaaagtcttaaatccatgattttatcaacatgcatgttgcatggtcaaattccaccat |
116 |
Q |
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| T |
51805812 |
aaactcaatctttgggaattaccaaaaagctttgtaagattgagaagtcttaaatccatgattttatcaacatgcatgttgcatggtcaaattccaccat |
51805713 |
T |
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| Q |
117 |
ccatatcaaatataacaacactcattgatcttgaattaagtggaaatttcctcacaggtcaaattccaaaagaacttggattgttgaaaaacttgcaaca |
216 |
Q |
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| T |
51805712 |
ccatatcaaatataacaacactcattgatcttgaattaagtggaaatttcctcacaggtcaaattccaaaagaacttggattgttgaaaaacttgcaaca |
51805613 |
T |
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| Q |
217 |
gcttgaactttactataactacttccttgttggcagcatccctgaagagcttggaaatttaacagaacttgtcgatttagatatgtcggtaaacaaatta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51805612 |
gcttgaactttactataactacttccttgttggcagcatccctgaagagcttggaaatttaacagaacttgtcgatttagatatgtcggtaaacaagtta |
51805513 |
T |
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| Q |
317 |
actgga |
322 |
Q |
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|||||| |
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| T |
51805512 |
actgga |
51805507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 20017340 - 20017470
Alignment:
| Q |
105 |
aaattccaccatccatatcaaatataacaacactcattgatcttgaattaagtggaaatttcctcacaggtcaaattccaaaagaacttggattgttgaa |
204 |
Q |
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|||| ||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||||||| || |||||||||| ||| |||||||||||||| |
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| T |
20017340 |
aaatcccaccatccatatcaaacataacaaccctcattgatcttgagctaagtgggaatttcctcgcaagtcaaattccttcagagcttggattgttgaa |
20017439 |
T |
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| Q |
205 |
aaacttgcaacagcttgaactttactataac |
235 |
Q |
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| T |
20017440 |
aaacttgcaacagcttgaacattgctataac |
20017470 |
T |
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