View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16438_low_25 (Length: 307)
Name: NF16438_low_25
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 83 - 299
Target Start/End: Original strand, 1163930 - 1164146
Alignment:
| Q |
83 |
atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1163930 |
atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa |
1164029 |
T |
|
| Q |
183 |
cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1164030 |
cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat |
1164129 |
T |
|
| Q |
283 |
tactaggcagaataatc |
299 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1164130 |
tactaggcagaataatc |
1164146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 83 - 299
Target Start/End: Complemental strand, 1849836 - 1849620
Alignment:
| Q |
83 |
atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa |
182 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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|
| T |
1849836 |
atctaatttctcgataccgagaacaacatattccactaactgatgcctagagaatgaaggcgtgaagggtgcatcccagtaacgatcagcctttaagaaa |
1849737 |
T |
|
| Q |
183 |
cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat |
282 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1849736 |
cagcgggtcaaggtaaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat |
1849637 |
T |
|
| Q |
283 |
tactaggcagaataatc |
299 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1849636 |
tactaggcagaataatc |
1849620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 95 - 299
Target Start/End: Complemental strand, 3299353 - 3299149
Alignment:
| Q |
95 |
aataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag |
194 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3299353 |
aataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag |
3299254 |
T |
|
| Q |
195 |
gtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa |
294 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
3299253 |
gtaaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaa |
3299154 |
T |
|
| Q |
295 |
taatc |
299 |
Q |
| |
|
||||| |
|
|
| T |
3299153 |
taatc |
3299149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 95 - 299
Target Start/End: Complemental strand, 3392246 - 3392042
Alignment:
| Q |
95 |
aataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag |
194 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392246 |
aataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag |
3392147 |
T |
|
| Q |
195 |
gtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa |
294 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
3392146 |
gtaaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaa |
3392047 |
T |
|
| Q |
295 |
taatc |
299 |
Q |
| |
|
||||| |
|
|
| T |
3392046 |
taatc |
3392042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 94 - 294
Target Start/End: Complemental strand, 38987556 - 38987356
Alignment:
| Q |
94 |
caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa |
193 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||| |||| ||||||| | ||||| ||||| | |||||| ||| ||| | |||||||||||||||||| |
|
|
| T |
38987556 |
caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa |
38987457 |
T |
|
| Q |
194 |
ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcaga |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||| ||| |||| ||||||| |
|
|
| T |
38987456 |
ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacattaggaggcaga |
38987357 |
T |
|
| Q |
294 |
a |
294 |
Q |
| |
|
| |
|
|
| T |
38987356 |
a |
38987356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 100 - 294
Target Start/End: Complemental strand, 40418140 - 40417946
Alignment:
| Q |
100 |
cgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaa |
199 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||| ||||||| | ||||| ||||| | |||||| ||| ||| | |||||||||||||||||||||||| |
|
|
| T |
40418140 |
cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa |
40418041 |
T |
|
| Q |
200 |
tggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| ||||||||| ||| |||| |||||||| |
|
|
| T |
40418040 |
tggatcaagcaaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatattttcaccgaaagaagcaacaacattaggaggcagaa |
40417946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 94 - 248
Target Start/End: Complemental strand, 39726269 - 39726115
Alignment:
| Q |
94 |
caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa |
193 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||| |||| ||||||| | ||||| ||||| | |||||| ||| ||| | |||||||||||||||||| |
|
|
| T |
39726269 |
caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa |
39726170 |
T |
|
| Q |
194 |
ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || || |||||| |
|
|
| T |
39726169 |
ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata |
39726115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 94 - 248
Target Start/End: Complemental strand, 39879671 - 39879517
Alignment:
| Q |
94 |
caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa |
193 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||| |||| ||||||| | ||||| ||||| | |||||| ||| ||| | |||||||||||||||||| |
|
|
| T |
39879671 |
caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa |
39879572 |
T |
|
| Q |
194 |
ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || || |||||| |
|
|
| T |
39879571 |
ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata |
39879517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 102 - 248
Target Start/End: Complemental strand, 39168749 - 39168603
Alignment:
| Q |
102 |
agaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatg |
201 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||| ||||||| ||||||||||||||| |||||| | | ||||||||||| || | ||||||||||||| |
|
|
| T |
39168749 |
agaacaacatatttcactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactcatcagcctttaaggaaaaagcagtcaaggtaaatg |
39168650 |
T |
|
| Q |
202 |
gatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata |
248 |
Q |
| |
|
||||||| ||||||| | |||||||||||||||| || ||||||||| |
|
|
| T |
39168649 |
gatcaagtaaagtaatttttttggcaaccctagtgcatataacaata |
39168603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 248
Target Start/End: Complemental strand, 39399735 - 39399601
Alignment:
| Q |
117 |
actaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaa---ag |
213 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||| ||||||| |||||| ||| ||||||||||| || | |||||||||||||||||||||||| || |
|
|
| T |
39399735 |
actaactgagtcctattgaatgaatgcgtgaaaggtgcattccagtagtgatcagcctttaaggaaaaagcggtcaaggtaaatggatcaagcaaagtag |
39399636 |
T |
|
| Q |
214 |
taaatgttttggcaaccctagtacaaataacaata |
248 |
Q |
| |
|
||| | |||||||||||||||| || || |||||| |
|
|
| T |
39399635 |
taatttttttggcaaccctagtgcatatgacaata |
39399601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 1163866 - 1163902
Alignment:
| Q |
19 |
gttcatccttaaaaaccagcttcttcttctgtttatt |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1163866 |
gttcatccttaaaaaccagcttcttcttctgtttatt |
1163902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 260
Target Start/End: Complemental strand, 40596485 - 40596325
Alignment:
| Q |
94 |
caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa |
193 |
Q |
| |
|
||||| |||| |||| |||||||||||||||| ||||| || |||||||||||| |||||| |||||| ||| || | ||||||| ||||| |||| |
|
|
| T |
40596485 |
caatatcgagcacagaatattccactaactgactcctagtgagtgaaggcgtgaaaagtgcattccagtactgatcaacatttaagatacagtacctcaa |
40596386 |
T |
|
| Q |
194 |
ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatattt |
260 |
Q |
| |
|
||| || |||||||||||||| | |||| |||||| ||||||| | |||||||| ||||||| |
|
|
| T |
40596385 |
ggtgaa--aatcaagcaaagtaattcttttagcaacc----tacaaatgataataggactaatattt |
40596325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 110 - 299
Target Start/End: Original strand, 25912538 - 25912727
Alignment:
| Q |
110 |
atattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagc |
209 |
Q |
| |
|
|||||| |||||||||||||||| |||| |||||||||||||||||| |||||| ||| ||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
25912538 |
atattcaactaactgaggcctagtgaattaaggcgtgaagggtgcattccagtactgatcagccttcaagaaacaatgagtcaaggtaaatggatcaagt |
25912637 |
T |
|
| Q |
210 |
aaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatc |
299 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||||||| |||| |||||||| |||| |
|
|
| T |
25912638 |
aaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatatttacactgaaagaagcagcaacattaggaggcagaaaaatc |
25912727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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