View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16438_low_29 (Length: 287)

Name: NF16438_low_29
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16438_low_29
NF16438_low_29
[»] chr3 (4 HSPs)
chr3 (13-287)||(32862001-32862280)
chr3 (164-222)||(10773480-10773538)
chr3 (89-186)||(34121716-34121812)
chr3 (158-223)||(50301850-50301915)
[»] chr8 (6 HSPs)
chr8 (92-279)||(42476467-42476658)
chr8 (158-278)||(28733167-28733287)
chr8 (165-234)||(10227258-10227326)
chr8 (13-45)||(42476361-42476393)
chr8 (195-234)||(10227337-10227376)
chr8 (158-278)||(4884243-4884363)
[»] chr2 (5 HSPs)
chr2 (92-273)||(33522289-33522474)
chr2 (142-234)||(23757695-23757791)
chr2 (67-110)||(23757824-23757867)
chr2 (158-283)||(43178345-43178470)
chr2 (13-45)||(33522548-33522580)
[»] chr5 (1 HSPs)
chr5 (158-278)||(37344522-37344642)
[»] chr1 (3 HSPs)
chr1 (158-234)||(3324913-3324989)
chr1 (156-266)||(32001396-32001506)
chr1 (158-227)||(48315122-48315191)
[»] chr4 (8 HSPs)
chr4 (142-278)||(39264676-39264816)
chr4 (158-273)||(48997072-48997187)
chr4 (142-234)||(2737717-2737813)
chr4 (158-233)||(38372670-38372745)
chr4 (158-234)||(45065564-45065640)
chr4 (82-115)||(45065683-45065716)
chr4 (212-272)||(22771909-22771969)
chr4 (158-278)||(49705158-49705278)
[»] chr6 (1 HSPs)
chr6 (158-234)||(23112055-23112131)
[»] chr7 (2 HSPs)
chr7 (147-273)||(31846517-31846642)
chr7 (200-278)||(46401232-46401310)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 32862280 - 32862001
Alignment:
Q  13 cagagaagaagaggtgaattggattgaaattgannnnnnnnn-ctcttcagaatagtgagaagtgagaactgatatgattaattgagatgtaatggttca 111  Q
    |||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32862280 cagagaagaagaggtgaattggattgaaattgattttttttttctcttcagaatagtgagaagtgagaactgatatgattaattgagatgtaatggttca 32862181  T
Q  112 gttcggttcacaacaattaaccgagtttaataaccgttcggttcagt----gaattgtttttaaaataacggtttggttcaataaataatgcaatgattc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32862180 gttcggttcacaacaattaaccgagtttaataaccgttcggttcagttagtgaattgtttttaaaataacggtttggttcaataaataatgcaatgattc 32862081  T
Q  208 agttaattttagtttggttcagttcggctaaccggtttgactcagtttttggttatttttgcccactcctacaaatatcc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32862080 agttaattttagtttggttcagttcggctaaccggtttgactcagtttttggttatttttgcccactcctacaaatatcc 32862001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 10773538 - 10773480
Alignment:
Q  164 gtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagttt 222  Q
    |||||||||||||||||| ||||||||||  |||  |||| ||||||||||||||||||    
T  10773538 gtttttaaaataacggttcggttcaataatcaataaaatggttcagttaattttagttt 10773480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 34121812 - 34121716
Alignment:
Q  89 attaattgagatgtaatggttcagttcggttcacaacaattaaccgagtttaataaccgttcggttcagtgaattgtttttaaaataacggtttggtt 186  Q
    ||||||| || ||||||||||| |||||||||| |||||||||| | |  ||| ||| |||||||| |||||| ||| |||||||||| |||| ||||    
T  34121812 attaattaagttgtaatggttcggttcggttcataacaattaactgcggataacaacggttcggtt-agtgaactgtctttaaaataatggttcggtt 34121716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 50301915 - 50301850
Alignment:
Q  158 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttg 223  Q
    |||| |||||||||||||| |||| || |||||||  |||| |||| |||||||||||||||||||    
T  50301915 tgaactgtttttaaaataatggttcggatcaataaccaatgtaatggttcagttaattttagtttg 50301850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 92 - 279
Target Start/End: Original strand, 42476467 - 42476658
Alignment:
Q  92 aattgagatgtaatggttcagttcggttcacaacaattaaccgagtttaataaccgttcggttc----agtgaattgtttttaaaataacggtttggttc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    ||||||||||||||||||||||||||  ||||    
T  42476467 aattgagatgtaatggttcagttcggttcacaacaattaaccgagtttaataaccgtttgattcagttagtgaattgtttttaaaataacggttcagttc 42476566  T
Q  188 aataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagtttttggttatttttgcccactcctac 279  Q
    ||||| |||| ||||  || ||||||||||||||||||||||||||| |||||||||    ||||||||||||||||||||| ||| |||||    
T  42476567 aataactaatacaatagtttagttaattttagtttggttcagttcggttaaccggttcagttcagtttttggttatttttgctcacccctac 42476658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 278
Target Start/End: Complemental strand, 28733287 - 28733167
Alignment:
Q  158 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagttttt 257  Q
    |||| |||||||||||||||||||  ||| |||||  |||| ||||||||||||||||||||||| |||| ||| || |||||||||  | |||||||||    
T  28733287 tgaactgtttttaaaataacggttctgtttaataaccaatgtaatgattcagttaattttagtttagttcggtttggttaaccggttcaattcagttttt 28733188  T
Q  258 ggttatttttgcccactccta 278  Q
     | ||||||||||||| ||||    
T  28733187 agatatttttgcccaccccta 28733167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 10227258 - 10227326
Alignment:
Q  165 tttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcgg 234  Q
    ||||||||| ||||||| ||||||||||  |||| |||| ||||||||||||||||||||||||||||||    
T  10227258 tttttaaaa-aacggttcggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcgg 10227326  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 42476361 - 42476393
Alignment:
Q  13 cagagaagaagaggtgaattggattgaaattga 45  Q
    |||||||||||||||||||||||||||||||||    
T  42476361 cagagaagaagaggtgaattggattgaaattga 42476393  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 10227337 - 10227376
Alignment:
Q  195 aatgcaatgattcagttaattttagtttggttcagttcgg 234  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  10227337 aatgtaatggttcagttaattttagtttggttcagttcgg 10227376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 278
Target Start/End: Complemental strand, 4884363 - 4884243
Alignment:
Q  158 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagttttt 257  Q
    ||||||||| | ||||||| |||| ||||||| || |  |  |||| ||||||||||| |  |  ||||| |||||| ||||||||| || |  ||||||    
T  4884363 tgaattgttatcaaaataatggttcggttcaagaattggttaaatggttcagttaattctgatacggttcggttcggttaaccggttcgaattggttttt 4884264  T
Q  258 ggttatttttgcccactccta 278  Q
    |||||||||||||||| ||||    
T  4884263 ggttatttttgcccaccccta 4884243  T

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Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 92 - 273
Target Start/End: Complemental strand, 33522474 - 33522289
Alignment:
Q  92 aattgagatgtaatggttcagttcggttcacaacaattaaccgagtttaataaccgttcggt----tcagtgaattgtttttaaaataacggtttggttc 187  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    | ||||||||||||||||||||||||||  ||||    
T  33522474 aattgagatgtaatggttaagttcggttcacaacaattaaccgagtttaataaccgtttggtttagttagtgaattgtttttaaaataacggttcagttc 33522375  T
Q  188 aataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagtttttggttatttttgcccac 273  Q
    ||||| | || ||||  |||||||||||||||||| ||||| ||||| |||||||||    |||||||||||||||||||| ||||    
T  33522374 aataactcatacaatagttcagttaattttagtttagttcacttcggttaaccggttcagttcagtttttggttatttttgtccac 33522289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 23757791 - 23757695
Alignment:
Q  142 taaccgttcggttcagtgaat----tgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcgg 234  Q
    ||||||||||||||||| |||    |||| |||||||||||| | ||||||||||  |||| |||| |||| |||||||||||||||||| ||||||    
T  23757791 taaccgttcggttcagttaataaattgttcttaaaataacggatcggttcaataaccaatgtaatggttcaattaattttagtttggttcggttcgg 23757695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 23757867 - 23757824
Alignment:
Q  67 gtgagaagtgagaactgatatgattaattgagatgtaatggttc 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  23757867 gtgagaattgagaactgatatgattaattgagatgtaatggttc 23757824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 283
Target Start/End: Original strand, 43178345 - 43178470
Alignment:
Q  158 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagttttt 257  Q
    ||||||||| | ||||||| |||| ||||||| || |  |  |||| ||||||||||| |  |  ||||| |||||| ||||||||| || |  ||||||    
T  43178345 tgaattgttatcaaaataatggttcggttcaagaattggttaaatggttcagttaattctgatacggttcggttcggttaaccggttcgaattggttttt 43178444  T
Q  258 ggttatttttgcccactcctacaaat 283  Q
    |||||||||||||||| |||||||||    
T  43178445 ggttatttttgcccacccctacaaat 43178470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 33522580 - 33522548
Alignment:
Q  13 cagagaagaagaggtgaattggattgaaattga 45  Q
    |||||||||||||||||||||||||||||||||    
T  33522580 cagagaagaagaggtgaattggattgaaattga 33522548  T

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Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 158 - 278
Target Start/End: Complemental strand, 37344642 - 37344522
Alignment:
Q  158 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagttttt 257  Q
    |||| ||||||||||||||||||| ||||||||||  |||| |||||||||||||||||||||||| |||||||||| |||  |||| || |||||||||    
T  37344642 tgaactgtttttaaaataacggttcggttcaataaccaatgtaatgattcagttaattttagtttgattcagttcggttaataggttcgattcagttttt 37344543  T
Q  258 ggttatttttgcccactccta 278  Q
    || ||||||||||||| ||||    
T  37344542 ggatatttttgcccaccccta 37344522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 3324913 - 3324989
Alignment:
Q  158 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcgg 234  Q
    |||||||||||||||||||||||| |||| |||||  |||| |||| ||||||||||||||||||||||||||||||    
T  3324913 tgaattgtttttaaaataacggttcggtttaataaccaatgtaatggttcagttaattttagtttggttcagttcgg 3324989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 32001396 - 32001506
Alignment:
Q  156 agtgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagttt 255  Q
    |||||||||| |||||||||| |||| ||||  |||| ||||  |||| |||||||||||||| | | ||||||||||| ||| ||||| |    |||||    
T  32001396 agtgaattgtctttaaaataatggttcggttagataattaatataatggttcagttaattttaatatagttcagttcggttaagcggttcggaatagttt 32001495  T
Q  256 ttggttatttt 266  Q
    |||||||||||    
T  32001496 ttggttatttt 32001506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 48315122 - 48315191
Alignment:
Q  158 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttc 227  Q
    |||| ||||||||||||||| ||| | || |||||  |||| |||| |||||||||||||||||||||||    
T  48315122 tgaactgtttttaaaataactgttcgatttaataatcaatgtaatggttcagttaattttagtttggttc 48315191  T

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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 142 - 278
Target Start/End: Complemental strand, 39264816 - 39264676
Alignment:
Q  142 taaccgttcggttcagtgaat----tgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggcta 237  Q
    ||||||||||||||||| |||    |||||||||||||| ||||  |||||||||  |||| |||| ||| |||||||||||||||||||| || || ||    
T  39264816 taaccgttcggttcagttaatgaactgtttttaaaataatggttcagttcaataaccaatgtaatggttcggttaattttagtttggttcattttggtta 39264717  T
Q  238 accggtttgactcagtttttggttatttttgcccactccta 278  Q
    | ||||||   ||||||||||| ||||||||||||| ||||    
T  39264716 atcggtttagttcagtttttggatatttttgcccaccccta 39264676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 158 - 273
Target Start/End: Original strand, 48997072 - 48997187
Alignment:
Q  158 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagttttt 257  Q
    |||| |||||||||||||||||||||||| |||||  |||| | || ||| |||||||||| ||||||||||||||| |||||| || || | | |||||    
T  48997072 tgaactgtttttaaaataacggtttggtttaataaccaatgtagtggttcggttaattttaatttggttcagttcggttaaccgattcgatttaattttt 48997171  T
Q  258 ggttatttttgcccac 273  Q
    || |||||||||||||    
T  48997172 ggatatttttgcccac 48997187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 2737717 - 2737813
Alignment:
Q  142 taaccgttcggttcagtgaat----tgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcgg 234  Q
    ||||||||||||||||| |||    ||||||||||||||||||| ||||||||||  |||| |||| |||||||||||||| |||||||| ||||||    
T  2737717 taaccgttcggttcagttaatgatttgtttttaaaataacggttcggttcaataaccaatgtaatggttcagttaattttaatttggttcggttcgg 2737813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 38372670 - 38372745
Alignment:
Q  158 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcg 233  Q
    |||| ||||||||||||||| ||| ||||||||||  ||||||||  |||||||||||||||||| |||| |||||    
T  38372670 tgaactgtttttaaaataactgttcggttcaataaccaatgcaatagttcagttaattttagtttagttcggttcg 38372745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 45065640 - 45065564
Alignment:
Q  158 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcgg 234  Q
    |||| ||||||||||||||||  | | ||||||||  |||| |||||||||| ||||||||||||||||| ||||||    
T  45065640 tgaactgtttttaaaataacgactcgattcaataaccaatgtaatgattcagctaattttagtttggttcggttcgg 45065564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 45065716 - 45065683
Alignment:
Q  82 tgatatgattaattgagatgtaatggttcagttc 115  Q
    ||||||||||||||||||| ||||||||||||||    
T  45065716 tgatatgattaattgagatctaatggttcagttc 45065683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 22771969 - 22771909
Alignment:
Q  212 aattttagtttggttcagttcggctaaccggtttgactcagtttttggttatttttgccca 272  Q
    ||||||| | ||||||||||||| ||||| ||| |  || |||||||||||||||||||||    
T  22771969 aattttaatatggttcagttcggttaaccagttcggatcggtttttggttatttttgccca 22771909  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 278
Target Start/End: Complemental strand, 49705278 - 49705158
Alignment:
Q  158 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagttttt 257  Q
    ||||||||| | ||||||| |||| ||||||| || |  |  |||| ||||||||||| |  |  ||||| |||||| ||||||||| || |  ||||||    
T  49705278 tgaattgttatcaaaataatggttcggttcaagaattggttaaatggttcagttaattctgatacggttcggttcggttaaccggttcgaattggttttt 49705179  T
Q  258 ggttatttttgcccactccta 278  Q
    |||||||||||||||| ||||    
T  49705178 ggttatttttgcccaccccta 49705158  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 23112055 - 23112131
Alignment:
Q  158 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcgg 234  Q
    |||| ||||||||||||||||||| ||||||||||  | || |||| || | |||||||| ||||||||| ||||||    
T  23112055 tgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcggttcgg 23112131  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 273
Target Start/End: Original strand, 31846517 - 31846642
Alignment:
Q  147 gttcggttcagtgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttg 246  Q
    |||||||| ||||||||||| | ||||||| ||||| |||| | || |  |  |||| |||||||||||||  | |||||| |||||| ||||| ||| |    
T  31846517 gttcggtt-agtgaattgttatcaaaataatggtttcgttcgagaattggttaaatggttcagttaattttgatatggttcggttcggttaaccagttcg 31846615  T
Q  247 actcagtttttggttatttttgcccac 273  Q
    | |  ||||||||||||||||||||||    
T  31846616 aattggtttttggttatttttgcccac 31846642  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 46401232 - 46401310
Alignment:
Q  200 aatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagtttttggttatttttgcccactccta 278  Q
    |||| |||||||||||||  | |||||| |||||| |||||||||| | |  | |||||||||||||||||||| ||||    
T  46401232 aatggttcagttaattttgatatggttcggttcggttaaccggtttaaattgggttttggttatttttgcccaccccta 46401310  T

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