View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_low_3 (Length: 514)
Name: NF16438_low_3
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 10 - 496
Target Start/End: Original strand, 47886315 - 47886801
Alignment:
| Q |
10 |
attatactaacggtgcatctccattaatgtcatagaataaacatagattttatcatgttaccttgtctgtctgctcgcataaatatctaaaccttgccag |
109 |
Q |
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| T |
47886315 |
attatactaacggtgcatctccattaatgtcatagaataaacatagattttatcatgttaccttctctgtctgctcgcataaatatctaaaccttgccag |
47886414 |
T |
|
| Q |
110 |
cctatcgacaggaaaaatttgaagtccagcaaccattaagtcaacaccagaaactggaccttgaatgtaaacaaaaacattagatggctgcttttcaatt |
209 |
Q |
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| T |
47886415 |
cctatcgacaggaaaaatttgaagtccagcaaccattaagtcaacaccagaaactggaccttgaatgtaaacaaaaacattagatggctgcttttcaatt |
47886514 |
T |
|
| Q |
210 |
ctaaacgaaccaccgatttcatgccatctgctgtcagaaacttgggtctgtcctccgttggcccattggccgtcaacactaaaggcaataccaacattct |
309 |
Q |
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| T |
47886515 |
ctaaacgaaccactgatttcatgccatctgctgtcagaaacttgggtctgtcctccgttggcccattggccgtcaacactaaaggcaataccaacattct |
47886614 |
T |
|
| Q |
310 |
gagggccatgtgatccagaaccaatcctgacccaagcagatacttgatatgttaaatagagtttcaatttctcagtgatcgtctgagaaggacccatata |
409 |
Q |
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| T |
47886615 |
gagggccatgtgatccagaaccaatcctgacccaagcagatacttgatatgttaaatagagtttcaatttctcagtgatcgcctgagaaggacccatata |
47886714 |
T |
|
| Q |
410 |
tgtttgtgtgcgattggttacaagaatgtaacgtccactcaggggttcatgaggaccgagagagtctcttgccattggtggaataac |
496 |
Q |
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| T |
47886715 |
tgtttgtgtgcgattggttacaagaatgtaacgtccgctcaggggttcatgaggaccgagagagtctcttgccattggtggaataac |
47886801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 64 - 492
Target Start/End: Complemental strand, 4622864 - 4622436
Alignment:
| Q |
64 |
atgttaccttgtctgtctgctcgcataaatatctaaaccttgccagcctatcgacaggaaaaatttgaagtccagcaaccattaagtcaacaccagaaac |
163 |
Q |
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|||| ||||||||||||||| |||||||||||| ||||| | ||||| ||||| |||||||||||||| |||||||||||||| ||||||||| | |
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| T |
4622864 |
atgtcaccttgtctgtctgcatctttaaatatctaaatcttgcatgtctatcaacagggaaaatttgaagtccggcaaccattaagtctacaccagaagc |
4622765 |
T |
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| Q |
164 |
tggaccttgaatgtaaacaaaaacattagatggctgcttttcaattctaaacgaaccaccgatttcatgccatctgctgtcagaaacttgggtctgtcct |
263 |
Q |
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| T |
4622764 |
tggaccttggatataaaccataatctttgttggctgcttttcaattctaaaggatccaccaatttcatgccatctatcatccgaaacctcggtttgtcct |
4622665 |
T |
|
| Q |
264 |
ccgttggcccattggccgtcaacactaaaggcaataccaacattctgagggccatgtgatccagaaccaatcctgacccaagcagatacttgatatgtta |
363 |
Q |
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| T |
4622664 |
ccattgatccactgattgtcagcaccaagggcaacattcacattctgtggtccatttgaactggaaccaatccggacccaagcagatacttgataagtca |
4622565 |
T |
|
| Q |
364 |
aatagagtttcaatttctcagtgatcgtctgagaaggacccatatatgtttgtgtgcgattggttacaagaatgtaacgtccactcaggggttcatgagg |
463 |
Q |
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|| | || || |||||||| |||||| ||||| ||||||||| | ||||| || | ||| |||||||| ||||| || ||||| ||| | | ||||| |
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| T |
4622564 |
aaaatagctttaatttctcggtgatcacctgagcaggacccatccaagtttgagtcctattagttacaagtatgtagcggccacttaggattccgtgagg |
4622465 |
T |
|
| Q |
464 |
accgagagagtctcttgccattggtggaa |
492 |
Q |
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|| ||||| ||||||||||||||||||| |
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| T |
4622464 |
tccaagagattctcttgccattggtggaa |
4622436 |
T |
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