View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_low_31 (Length: 269)
Name: NF16438_low_31
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 44579565 - 44579337
Alignment:
| Q |
15 |
aataactacaataacaacgaaaaaccgcaattaatagcaaaacttacccaaatcattgtcaggaacgtcacaatcttcaccattctcgtcacaatcttca |
114 |
Q |
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| T |
44579565 |
aataactacaataacaacgaaaaaccacaattaatagcaaaacttacccaaatcattgtcaggaacgt---------------------cacaatcttca |
44579487 |
T |
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| Q |
115 |
ccattctcttcacactctagataaaagctttgattctcatttgacccggttacggttgctttgtttaggtcactgcaatgcaaatttctaggacgcttta |
214 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44579486 |
ccattctcgtcacactctagataaaagctttgattctcatttgacccggttacggttgctttgtttaggtcacctcaatgcaaatttctaggacgcttta |
44579387 |
T |
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| Q |
215 |
gaacatatctaccaggtgaaataggggtaagctttcttgtcacatctctg |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44579386 |
gaacatatctaccaggtgaaataggggtaagctttcttgtcacatttctg |
44579337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 39714001 - 39713773
Alignment:
| Q |
15 |
aataactacaataacaacgaaaaaccgcaattaatagcaaaacttacccaaatcattgtcaggaacgtcacaatcttcaccattctcgtcacaatcttca |
114 |
Q |
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|||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39714001 |
aataactaaaataacgacgaaaaaccgcaattaattgcaaaacttacccaaatcattgtcaggaacgt---------------------cacaatcttca |
39713923 |
T |
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| Q |
115 |
ccattctcttcacactctagataaaagctttgattctcatttgacccggttacggttgctttgtttaggtcactgcaatgcaaatttctaggacgcttta |
214 |
Q |
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|||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39713922 |
ccattctcgccgcactctggataaaagctttgattctcatttgacccggttacggttgctttgtttaggtcaccgcaatgcaaatttctaggacgcttta |
39713823 |
T |
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| Q |
215 |
gaacatatctaccaggtgaaataggggtaagctttcttgtcacatctctg |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39713822 |
gaacatatctaccaggtgaaataggggtaagctttcttgtcacatttctg |
39713773 |
T |
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