View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_low_32 (Length: 266)
Name: NF16438_low_32
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 30258684 - 30258444
Alignment:
| Q |
11 |
catcatcaatctcttcaatgtcaaatgctgaccgagagtcaccagaacaacagcaacaccatgagaagtttgtctttcgccttttgtcagatggtggctt |
110 |
Q |
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| T |
30258684 |
catcatcaatctcttcaatgtcaaatgctgaccgagagtcaccagaacaacagcaacaccatgagaagtttgtctttcgtcttttgtcagatggtggctt |
30258585 |
T |
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| Q |
111 |
atagccatataatgcctgcctgttgaacacacatccagtaccaacatacactggaccttgaattccatcaaggcatttcatgttgatctacaaacaagga |
210 |
Q |
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| T |
30258584 |
atagccatataatgcctgcctgttgaacacacatccagtaccaacatacactggaccttgaattccatcaaggcatttcatgttgatctacaaacaagga |
30258485 |
T |
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| Q |
211 |
aaagttcaaggcaggagttaaagatttgttaatgaaattgc |
251 |
Q |
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| T |
30258484 |
aaagttcaaggcaggagttaaagatttgttaatgaaattgc |
30258444 |
T |
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Back To:
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 15172406 - 15172308
Alignment:
| Q |
102 |
tggtggcttatagccatataatgcctgcctgttgaacacacatccagtaccaacatacactggaccttgaattccatcaaggcatttcatgttgatcta |
200 |
Q |
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| T |
15172406 |
tggtggatcatatccatacaatgcttgtctgttgaacacagttccggtaccgacatacactggaccttgaataccatcaagccctttcatattgatcta |
15172308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 35925445 - 35925517
Alignment:
| Q |
110 |
tatagccatataatgcctgcctgttgaacacacatccagtaccaacatacactggaccttgaattccatcaag |
182 |
Q |
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| T |
35925445 |
tatagccataaagtgcttgtcggttgaaaacacatccagtccccacatacattggtccttgaatgccatcaag |
35925517 |
T |
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