View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16438_low_36 (Length: 244)

Name: NF16438_low_36
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16438_low_36
NF16438_low_36
[»] chr8 (2 HSPs)
chr8 (84-244)||(16357029-16357188)
chr8 (84-112)||(24512071-24512099)
[»] chr7 (1 HSPs)
chr7 (84-244)||(25098290-25098447)
[»] chr4 (1 HSPs)
chr4 (84-244)||(50438218-50438376)
[»] scaffold0003 (1 HSPs)
scaffold0003 (87-244)||(44774-44927)
[»] chr6 (1 HSPs)
chr6 (87-244)||(27442434-27442587)
[»] chr1 (1 HSPs)
chr1 (84-244)||(12844046-12844203)
[»] chr5 (1 HSPs)
chr5 (139-244)||(18032640-18032745)


Alignment Details
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 84 - 244
Target Start/End: Complemental strand, 16357188 - 16357029
Alignment:
Q  84 gtccctaaatgtaaatcctttttcaaattacaacacacattaattannnnnnnnnccatatatacccttatttaatactactactaattctaaagttaca 183  Q
    ||||||||||||||| || ||||||||||||||||  |||||||||         ||||||||||||||||||||||||||||||||||||||| |||||    
T  16357188 gtccctaaatgtaaaccccttttcaaattacaacatgcattaattatttttttt-ccatatatacccttatttaatactactactaattctaaaattaca 16357090  T
Q  184 ataaattgacttttcacattatctcattaaacaacactgggaagagaaaagagtttaattc 244  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16357089 ataaattgacttttcacattatctcattaaacaacaccgggaagagaaaagagtttaattc 16357029  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 24512071 - 24512099
Alignment:
Q  84 gtccctaaatgtaaatcctttttcaaatt 112  Q
    |||||||||||||||||||||||||||||    
T  24512071 gtccctaaatgtaaatcctttttcaaatt 24512099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 84 - 244
Target Start/End: Original strand, 25098290 - 25098447
Alignment:
Q  84 gtccctaaatgtaaatcctttttcaaattacaacacacattaattannnnnnnnnccatatatacccttatttaatactactactaattctaaagttaca 183  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||         |||||||||||||||||||||| |||||||||||||||| |||||    
T  25098290 gtccttaaatgtaaatcctttttcaaattacaacacgcattaattatttttt---ccatatatacccttatttaatattactactaattctaaaattaca 25098386  T
Q  184 ataaattgacttttcacattatctcattaaacaacactgggaagagaaaagagtttaattc 244  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  25098387 ataaattgacttttcacattatctcattaaacaacaccgggaagagaaaagagattaattc 25098447  T

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Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 84 - 244
Target Start/End: Original strand, 50438218 - 50438376
Alignment:
Q  84 gtccctaaatgtaaatcctttttcaaattacaacacacattaattannnnnnnnnccatatatacccttatttaatactactactaattctaaagttaca 183  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||         |||||||||||||||||||||| |||||||||||||||| |||||    
T  50438218 gtccctaaatgtaaaccccttttcaaattacaacacgcattaattattttttt--ccatatatacccttatttaatagtactactaattctaaaattaca 50438315  T
Q  184 ataaattgacttttcacattatctcattaaacaacactgggaagagaaaagagtttaattc 244  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  50438316 ataaattgacttttcacattatctcattaaacaacaccgggaagagaaaagagattaattc 50438376  T

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Target: scaffold0003 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 44774 - 44927
Alignment:
Q  87 cctaaatgtaaatcctttttcaaattacaacacacattaattannnnnnnnnccatatatacccttatttaatactactactaattctaaagttacaata 186  Q
    |||||||||||| |||||| ||||||||||||| |||||||||         ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44774 cctaaatgtaaaccctttt-caaattacaacacgcattaattatttttt---ccatatatacccttatttaatactactactaattctaaaattacaata 44869  T
Q  187 aattgacttttcacattatctcattaaacaacactgggaagagaaaagagtttaattc 244  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  44870 aattgacttttcacattatcttattaaacaacaccgggaagagaaaagagtttaattc 44927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 87 - 244
Target Start/End: Complemental strand, 27442587 - 27442434
Alignment:
Q  87 cctaaatgtaaatcctttttcaaattacaacacacattaattannnnnnnnnccatatatacccttatttaatactactactaattctaaagttacaata 186  Q
    |||||||||||| |||||| ||||||||||||| |||||||||         ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27442587 cctaaatgtaaaccctttt-caaattacaacacgcattaattatttttt---ccatatatacccttatttaatactactactaattctaaaattacaata 27442492  T
Q  187 aattgacttttcacattatctcattaaacaacactgggaagagaaaagagtttaattc 244  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  27442491 aattgacttttcacattatcttattaaacaacaccgggaagagaaaagagtttaattc 27442434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 84 - 244
Target Start/End: Original strand, 12844046 - 12844203
Alignment:
Q  84 gtccctaaatgtaaatcctttttcaaattacaacacacattaattannnnnnnnnccatatatacccttatttaatactactactaattctaaagttaca 183  Q
    ||||||||||||||| || |||| |||||||||||| |||||||||          |||||||||||||||||||||||||||||||||||||| |||||    
T  12844046 gtccctaaatgtaaacccctttttaaattacaacacgcattaattattttttt---catatatacccttatttaatactactactaattctaaaattaca 12844142  T
Q  184 ataaattgacttttcacattatctcattaaacaacactgggaagagaaaagagtttaattc 244  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  12844143 ataaattgacttttcacattatctcattaaacaacaccaggaagagaaaagagtttaattc 12844203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 18032745 - 18032640
Alignment:
Q  139 ccatatatacccttatttaatactactactaattctaaagttacaataaattgacttttcacattatctcattaaacaacactgggaagagaaaagagtt 238  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||    
T  18032745 ccatatatacccttattcaatactactactaattctaaaattacaataaattaacttttcacattatctcattaaacaacaccggaaagagaaaagagtt 18032646  T
Q  239 taattc 244  Q
    ||||||    
T  18032645 taattc 18032640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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