View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16438_low_4 (Length: 499)

Name: NF16438_low_4
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16438_low_4
NF16438_low_4
[»] chr3 (4 HSPs)
chr3 (1-483)||(32861395-32861877)
chr3 (4-66)||(41459053-41459115)
chr3 (1-51)||(49526724-49526774)
chr3 (1-50)||(45423823-45423872)
[»] chr1 (3 HSPs)
chr1 (1-60)||(25061237-25061296)
chr1 (1-50)||(23628761-23628810)
chr1 (1-51)||(48002423-48002473)
[»] chr6 (1 HSPs)
chr6 (1-50)||(21254933-21254982)
[»] chr5 (2 HSPs)
chr5 (1-50)||(7178789-7178838)
chr5 (14-60)||(2694825-2694871)
[»] chr2 (1 HSPs)
chr2 (1-50)||(25747934-25747983)
[»] chr8 (2 HSPs)
chr8 (2-50)||(3619124-3619172)
chr8 (1-50)||(8702462-8702511)
[»] chr7 (1 HSPs)
chr7 (4-60)||(1766433-1766489)
[»] chr4 (2 HSPs)
chr4 (1-52)||(4682211-4682262)
chr4 (1-49)||(28752498-28752546)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-39)||(138563-138601)


Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 32861877 - 32861395
Alignment:
Q  1 atgtttggatacattaacataaaagagattcttatcaatttatgttgtttatataatttggataaagcatttggatgtctaataaccaagatgagtttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32861877 atgtttggatacattaacataaaagagattcttatcaatttatgttgtttatataatttggataaagcatttggatgtctaataaccaagatgagtttca 32861778  T
Q  101 atgaatatctgataaagctgtgtatagtcatttttcggattgttgatttcgatatttcattttatccctccacaaatgtaaataatattgcgattagcca 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32861777 atgaatatctgataaagttgtgtatagtcatttttcggattgttgatttcgatatttcattttatccctccacaaatgtaaataatattgcgattagcca 32861678  T
Q  201 agaaatttacatgcacaaataaaagtttagactagacaggtcctaatattagcatataatctcaataaaaggaagcataaaataaagttccacacaactg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32861677 agaaatttacatgcacaaataaaagtttagactagacaggtcctaatattagcatataatctcaataaaaggaagcataaaataaagttccacacaactg 32861578  T
Q  301 agtaatgttaattatagtccacttcctcacaagtgcttatggtcaaataagtcaattaatgtaacgaaacgactagctaagcggaaaacagcaccatnnn 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||       
T  32861577 agtaatgttaattatagtccacttcctcacaagtgcttatggtcaaataagtcaattaatgtaacgaaacgactagctaagtggaaaacagcaccataaa 32861478  T
Q  401 nnnncaaaatcaacatttgcagattgtaatcacattcatatagttttgtttcaagcataaaacaaaaagagaattgaagaacc 483  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32861477 aaaacaaaatcaacatttgcagattgtaatcacattcatatagttttgtttcaagcataaaacaaaaagagaattgaagaacc 32861395  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 41459115 - 41459053
Alignment:
Q  4 tttggatacattaacataaaagagattcttatcaatttatgttgtttatataatttggataaa 66  Q
    ||||||||| |||||||||||| |||||||||||||| ||| |||||  |||||||| |||||    
T  41459115 tttggataccttaacataaaagtgattcttatcaattcatggtgtttggataatttgaataaa 41459053  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 49526724 - 49526774
Alignment:
Q  1 atgtttggatacattaacataaaagagattcttatcaatttatgttgttta 51  Q
    ||||||||||||||| |  |||||  |||||||||||||||||||||||||    
T  49526724 atgtttggatacattcatgtaaaattgattcttatcaatttatgttgttta 49526774  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 45423823 - 45423872
Alignment:
Q  1 atgtttggatacattaacataaaagagattcttatcaatttatgttgttt 50  Q
    ||||||||||| |||||  |||||| |||||||||||||| |||||||||    
T  45423823 atgtttggatatattaaagtaaaagtgattcttatcaattcatgttgttt 45423872  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25061296 - 25061237
Alignment:
Q  1 atgtttggatacattaacataaaagagattcttatcaatttatgttgtttatataatttg 60  Q
    |||||||||||| |||||||||||| |||||||||||||| ||| |||||  ||||||||    
T  25061296 atgtttggataccttaacataaaagtgattcttatcaattgatgatgtttggataatttg 25061237  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 23628761 - 23628810
Alignment:
Q  1 atgtttggatacattaacataaaagagattcttatcaatttatgttgttt 50  Q
    ||||||||||||| |||| |||||  ||||||||||||||||||||||||    
T  23628761 atgtttggatacaataacctaaaattgattcttatcaatttatgttgttt 23628810  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 48002423 - 48002473
Alignment:
Q  1 atgtttggatacattaacataaaagagattcttatcaatttatgttgttta 51  Q
    |||||||||||||||| || ||||| |||||||||| ||||||| ||||||    
T  48002423 atgtttggatacattaccacaaaagtgattcttatcgatttatgatgttta 48002473  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 21254933 - 21254982
Alignment:
Q  1 atgtttggatacattaacataaaagagattcttatcaatttatgttgttt 50  Q
    ||||||||||||| |||| |||||  ||||||||||||||||||||||||    
T  21254933 atgtttggatacaataacctaaaattgattcttatcaatttatgttgttt 21254982  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 7178838 - 7178789
Alignment:
Q  1 atgtttggatacattaacataaaagagattcttatcaatttatgttgttt 50  Q
    ||||||||||||| |||| |||||  ||||||||||||||||||||||||    
T  7178838 atgtttggatacaataacctaaaattgattcttatcaatttatgttgttt 7178789  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 2694825 - 2694871
Alignment:
Q  14 ttaacataaaagagattcttatcaatttatgttgtttatataatttg 60  Q
    |||||||||||| |||||||||||||| ||| ||||| |||||||||    
T  2694825 ttaacataaaagtgattcttatcaattgatgatgtttgtataatttg 2694871  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25747934 - 25747983
Alignment:
Q  1 atgtttggatacattaacataaaagagattcttatcaatttatgttgttt 50  Q
    ||||||||||||| |||| |||||  ||||||||||||||||||||||||    
T  25747934 atgtttggatacaataacctaaaattgattcttatcaatttatgttgttt 25747983  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 3619124 - 3619172
Alignment:
Q  2 tgtttggatacattaacataaaagagattcttatcaatttatgttgttt 50  Q
    |||||||||||||||| || |||| ||||||||||||| ||||||||||    
T  3619124 tgtttggatacattaatatgaaagtgattcttatcaatgtatgttgttt 3619172  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8702462 - 8702511
Alignment:
Q  1 atgtttggatacattaacataaaagagattcttatcaatttatgttgttt 50  Q
    |||||||||||||||| | | |||| |||||||||||||| |||||||||    
T  8702462 atgtttggatacattatccttaaagtgattcttatcaattcatgttgttt 8702511  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 1766489 - 1766433
Alignment:
Q  4 tttggatacattaacataaaagagattcttatcaatttatgttgtttatataatttg 60  Q
    ||||||||| |||||||||||| |||||||||||||| ||| |||||  ||||||||    
T  1766489 tttggataccttaacataaaagtgattcttatcaattgatgatgtttgaataatttg 1766433  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4682262 - 4682211
Alignment:
Q  1 atgtttggatacattaacataaaagagattcttatcaatttatgttgtttat 52  Q
    ||||||||||| ||||||||||||  |||||| ||||||||||||| |||||    
T  4682262 atgtttggatagattaacataaaaatgattctcatcaatttatgttctttat 4682211  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28752546 - 28752498
Alignment:
Q  1 atgtttggatacattaacataaaagagattcttatcaatttatgttgtt 49  Q
    |||||||||| | |||||||||||| |||||||||||||| ||| ||||    
T  28752546 atgtttggatgccttaacataaaagtgattcttatcaattcatgatgtt 28752498  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 138563 - 138601
Alignment:
Q  1 atgtttggatacattaacataaaagagattcttatcaat 39  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  138563 atgtttggataccttaacataaaagtgattcttatcaat 138601  T

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