View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16438_low_42 (Length: 238)
Name: NF16438_low_42
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_low_42 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 51115215 - 51114999
Alignment:
| Q |
1 |
catgagagacttgtgtattcaataatcaagtcaccacaaacagaatcattaagcaacaacgaaagttgatcaaaaactaaatagaaacaacaaaatatac |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
51115215 |
catgagagacttgt--attcaataatcaagtcac-acaaacagaatcattaagcaacaacgaaagttgatcaaaaactaaatagaaacaacaaaatgtac |
51115119 |
T |
|
| Q |
101 |
accaaaatcttcctgagtcatagttttgtaagccatccattgtatttgaaatattgatacagagaacaaccacctaatttccaaactcaggatttccttt |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51115118 |
acctaaatcttcctgagtcatagttttgtaagccatccattgtatttgaaatattgaaacagagaacaaccacctaatttccaaactcaggatttccttt |
51115019 |
T |
|
| Q |
201 |
ttgataactaacgtgcattc |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
51115018 |
ttgataactaacgtgcattc |
51114999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 1119198 - 1119125
Alignment:
| Q |
99 |
acaccaaaatcttcctgagtcatagttttgtaagccatccattgtatttgaaatattgatacagagaacaacca |
172 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | ||||||| ||||||| ||| |||||||||||||| |
|
|
| T |
1119198 |
acaccaaaatcttcctgagtcgtagttttgtaagccgtacattgtaactgaaatactgaaacagagaacaacca |
1119125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 29020664 - 29020718
Alignment:
| Q |
82 |
tagaaacaacaaaatatacaccaaaatcttcctgagtcatagttttgtaagccat |
136 |
Q |
| |
|
|||| |||||| || ||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
29020664 |
tagagacaacacaaaatacaccaaaatcttcctgagtcatagttctgtaaaccat |
29020718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University