View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16438_low_9 (Length: 415)
Name: NF16438_low_9
Description: NF16438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16438_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 62 - 402
Target Start/End: Complemental strand, 52387643 - 52387303
Alignment:
| Q |
62 |
ttcttattatataaataaaaatagcttgtatataagcaagcacttatatgataagtgtttagttaagtacccatttccagaaaagtcaaagcggaaagaa |
161 |
Q |
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| T |
52387643 |
ttcttattatataaataaaaatagcttgtatataagcaagcatttatatgataagtgtttagttaagtacccatttccagaaaagtcaaagcggaaagaa |
52387544 |
T |
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| Q |
162 |
ctgattccagctttttccaatgcagcagcaatgttcaccatggatttggattcctgaagataagaaaacataatcaatgaaattgggtacaaatacaaag |
261 |
Q |
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| T |
52387543 |
ctgattccagctttttccaatgcagcagcaatgttcactatggatttggattcctgaagataagaaaacataatcaatgaaattgggtacaaatacaaag |
52387444 |
T |
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| Q |
262 |
ccattaaaaggtgaacgtatgaaagaaacaaacttttgaggagcgaaagccatggcacaagattacaatctccttagttccagaatcttgcaatataccc |
361 |
Q |
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| T |
52387443 |
ccattaaaaggtgaacgtatgaaagaaacaaacttttgaggagcgaaagccatggcacaagattacaatctccttagttccagaatcttgcaatataccc |
52387344 |
T |
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| Q |
362 |
actaatttttcaccatgcttattgggtattatgactctctt |
402 |
Q |
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| T |
52387343 |
actaatttttcaccatgcttattgggtattatgactctctt |
52387303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 399
Target Start/End: Original strand, 18695580 - 18695665
Alignment:
| Q |
314 |
tggcacaagattacaatctccttagttccagaatcttgcaatatacccactaatttttcaccatgcttattgggtattatgactct |
399 |
Q |
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| T |
18695580 |
tggcaccatattacaatcttcttggttccataatcttgcaatatacagactaatttgtcactgtacttgttggttattatggctct |
18695665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 52420632 - 52420592
Alignment:
| Q |
129 |
tacccatttccagaaaagtcaaagcggaaagaactgattcc |
169 |
Q |
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| T |
52420632 |
tacccatttccagtgaagtcaaagcggaaagaactaattcc |
52420592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 4180932 - 4180857
Alignment:
| Q |
129 |
tacccatttccagaaaagtcaaagcggaaagaactgattccagctttttccaatgcagcagcaatgttcaccatgg |
204 |
Q |
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| T |
4180932 |
tacccatttccggcgaagtcaaagcggaaggcactgattccatttttttccagagcagcagcaatgttcaccatgg |
4180857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 17341514 - 17341588
Alignment:
| Q |
129 |
tacccatttccagaaaagtcaaagcggaaagaactgattccagctttttccaatgcagcagcaatgttcaccatg |
203 |
Q |
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| T |
17341514 |
tacccatttccagaaaagtcaaaacggaaagaactaatttgtgccttttccaatgcagcaacaaggttcaacatg |
17341588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 17302263 - 17302332
Alignment:
| Q |
129 |
tacccatttccagaaaagtcaaagcggaaagaactgattccagctttttccaatgcagcagcaatgttca |
198 |
Q |
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| T |
17302263 |
tacccatttccagaaaagtcaaaacggaaagaactaacttgtgccttttccaatgcaacagcaaggttca |
17302332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 17317360 - 17317429
Alignment:
| Q |
129 |
tacccatttccagaaaagtcaaagcggaaagaactgattccagctttttccaatgcagcagcaatgttca |
198 |
Q |
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| T |
17317360 |
tacccatttccagaaaagtcaaaacggaaagaactaatctgttccttttccaatgcagcagcaaggttca |
17317429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 17326178 - 17326237
Alignment:
| Q |
129 |
tacccatttccagaaaagtcaaagcggaaagaactgattccagctttttccaatgcagca |
188 |
Q |
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| T |
17326178 |
tacccatttccagaaaagtcaaaacggaaagaactaatttgtgtcttttccaatgcagca |
17326237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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