View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16439_high_3 (Length: 304)
Name: NF16439_high_3
Description: NF16439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16439_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 10245336 - 10245191
Alignment:
| Q |
14 |
ttatacttccttcctttgacttattttttctatttgccttttaatcttcataaaagtttaatactcactcaatattttacattttttattggttctggaa |
113 |
Q |
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| T |
10245336 |
ttatacttccttcctttgacttattttttctatttgccttttaatcttcataaaagtttaatactcactcaatattttacattttttattggttctggaa |
10245237 |
T |
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| Q |
114 |
ttttctcttgctagtaattttttccttctagatgaacttgatttga |
159 |
Q |
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| T |
10245236 |
ttttctcttgctagtaatttttttcttctacatgaacttgatttga |
10245191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 10245119 - 10245066
Alignment:
| Q |
232 |
tttcttctccactagccaactctgttgttttctatcactgtctaatgtttttct |
285 |
Q |
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| T |
10245119 |
tttcttctccactagccaactctgttgttttctatcactgtctaatgtttttct |
10245066 |
T |
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