View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16439_low_2 (Length: 387)
Name: NF16439_low_2
Description: NF16439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16439_low_2 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 12 - 365
Target Start/End: Original strand, 31320077 - 31320430
Alignment:
| Q |
12 |
caggttcaacagtaggtggtggttcagctgtgaattggtcagcatgcataagaacaccacagaatgtgttaaaagaatggtcagatgaacacaaacttcc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320077 |
caggttcaacagtaggtggtggttcagctgtgaattggtcagcatgcataagaacaccacagaatgtgttaaaagaatggtcagatgaacacaaacttcc |
31320176 |
T |
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| Q |
112 |
cctctttgaaagcttagagtatctatctgctatggaaaccgtgtgtgagaggattggtgtcaaagaaaattgtacacaagaaggattccaaaatcaagta |
211 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31320177 |
cctctttgaaaccttagagtatctatctgctatggaaaccgtgtgtgagaggattggtgtcaatgaaaattgtacacaagaaggattccaaaatcaagta |
31320276 |
T |
|
| Q |
212 |
ttaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320277 |
ttaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaa |
31320376 |
T |
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| Q |
312 |
aaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaag |
365 |
Q |
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| T |
31320377 |
agggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaag |
31320430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 365
Target Start/End: Original strand, 31332330 - 31332683
Alignment:
| Q |
12 |
caggttcaacagtaggtggtggttcagctgtgaattggtcagcatgcataagaacaccacagaatgtgttaaaagaatggtcagatgaacacaaacttcc |
111 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||||| | || ||||| |||||||||||||| ||||||||||| | |
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| T |
31332330 |
caggttcaacagtaggtggtggttcagctgttaattggtcagcttgcattaaaacaccagaaaaggtgttgaaagaatggtcagagaaacacaaactttc |
31332429 |
T |
|
| Q |
112 |
cctctttgaaagcttagagtatctatctgctatggaaaccgtgtgtgagaggattggtgtcaaagaaaattgtacacaagaaggattccaaaatcaagta |
211 |
Q |
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|||||||| ||| ||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31332430 |
actctttgatagcatagagtatctatctgctatggaaactgtgtgcgagagaattggtgtcaacgaaaattgtacacaagaaggattccaaaatcaagta |
31332529 |
T |
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| Q |
212 |
ttaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaa |
311 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31332530 |
ttaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaa |
31332629 |
T |
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| Q |
312 |
aaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaag |
365 |
Q |
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| T |
31332630 |
agggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaag |
31332683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 365
Target Start/End: Complemental strand, 3593 - 3240
Alignment:
| Q |
12 |
caggttcaacagtaggtggtggttcagctgtgaattggtcagcatgcataagaacaccacagaatgtgttaaaagaatggtcagatgaacacaaacttcc |
111 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||||| | || ||||| |||||||||||||| ||||||||||| | |
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| T |
3593 |
caggttcaacagtaggtggtggttcagctgttaattggtcagcttgcattaaaacaccagaaaaggtgttgaaagaatggtcagagaaacacaaactttc |
3494 |
T |
|
| Q |
112 |
cctctttgaaagcttagagtatctatctgctatggaaaccgtgtgtgagaggattggtgtcaaagaaaattgtacacaagaaggattccaaaatcaagta |
211 |
Q |
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|||||||| ||| ||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3493 |
actctttgatagcatagagtatctatctgctatggaaactgtgtgcgagagaattggtgtcaacgaaaattgtacacaagaaggattccaaaatcaagta |
3394 |
T |
|
| Q |
212 |
ttaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaa |
311 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3393 |
ttaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaa |
3294 |
T |
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| Q |
312 |
aaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaag |
365 |
Q |
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| T |
3293 |
agggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaag |
3240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 325
Target Start/End: Complemental strand, 33522105 - 33522023
Alignment:
| Q |
243 |
aagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaaaaggtgagaaacaa |
325 |
Q |
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|||| ||||||||||| ||||||||| ||| | ||||||| |||||||| ||| ||||||||| ||||||| || |||||| |
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| T |
33522105 |
aagtcgattatgtgccgagaaattcatcagagcatcattactgtggttcttgtaactatggttgtacaaaaggagataaacaa |
33522023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 33522336 - 33522292
Alignment:
| Q |
12 |
caggttcaacagtaggtggtggttcagctgtgaattggtcagcat |
56 |
Q |
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||||||||||| | ||||||||||| ||||| ||||||||||||| |
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| T |
33522336 |
caggttcaacaattggtggtggttctgctgttaattggtcagcat |
33522292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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