View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_103 (Length: 254)
Name: NF1643_high_103
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_103 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 15996436 - 15996678
Alignment:
| Q |
1 |
ttctcttgacttgatgtggtattgttgtcgaatgtatgcctaactttaggcgttgatcattatttattagatagatggctgattccacgctacattggaa |
100 |
Q |
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| T |
15996436 |
ttctcttgacttgatgtggtattgttgtcgaatgtatgcctaactttaggcgttgatcattatttattagatagatggttgattctacgctacattggaa |
15996535 |
T |
|
| Q |
101 |
atatgaattatagtattgaaccctttgtgttgttgatatgagttgaatcaagttgtgggacactattgagttgggagtgtcgaatgtaatgttactaagt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15996536 |
atattaattatagtattgaaccctttgtgttgttgatatgagttgaatcaagttgtgggacactattgagttgggaatgtcgaatgtaatgttactaagt |
15996635 |
T |
|
| Q |
201 |
tgttgccaacgttgccaaatcatattcatccatttctctgctc |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15996636 |
tgttgccaacgttgccaaatcatattcatccatttctctgctc |
15996678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 393240 - 393345
Alignment:
| Q |
89 |
gctacattggaaatatgaattatagtattgaaccctttgtgttgttgatatgagttgaatc-aagttgtgggacactattgagttgggagtgtcgaatgt |
187 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
393240 |
gctacattggaagtatgaattatagtattgaatcctttgtgttgctgatatgagttgaatctaagttgtgggacactattgagttgggagtgtcgaatgt |
393339 |
T |
|
| Q |
188 |
aatgtt |
193 |
Q |
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|||||| |
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| T |
393340 |
aatgtt |
393345 |
T |
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