View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_high_104 (Length: 254)

Name: NF1643_high_104
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_high_104
NF1643_high_104
[»] chr2 (3 HSPs)
chr2 (124-245)||(43527146-43527271)
chr2 (31-70)||(43527053-43527092)
chr2 (196-238)||(43542440-43542482)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 43527146 - 43527271
Alignment:
Q  124 ggttgatgtttcctgtttgccgaatgcttagatggatttgaagtaaagggccggggtagatgatcaccattatattgcctccacaaatcgaccag----a 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |    
T  43527146 ggttgatgtttcctgtttgccgaatgcttagatggatttgaagtaaagggccggggtagatgatcaccattatattgcctccacaaatcgaccagacata 43527245  T
Q  220 cattctggatccaacacttctgatac 245  Q
    ||||||||||||||||||||||||||    
T  43527246 cattctggatccaacacttctgatac 43527271  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 43527053 - 43527092
Alignment:
Q  31 aggttcagatggacaacatgaacataaagcaacacttgac 70  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43527053 aggttcagatggacaacatgaacataaagcaacacttgac 43527092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 43542440 - 43542482
Alignment:
Q  196 tattgcctccacaaatcgaccagacattctggatccaacactt 238  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  43542440 tattgcctccacaaatcgaccagacattctggatccagcactt 43542482  T

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