View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_107 (Length: 250)
Name: NF1643_high_107
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_107 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 45109645 - 45109409
Alignment:
| Q |
14 |
agagaaccatagataaatgtccaagccagatatgatacttgatgcttgactcagatgtgagtccaacaagaggcagaatagaagacattcttgtgactgg |
113 |
Q |
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| T |
45109645 |
agagaaccatagataattgtccaagccagatatgatacttgatgcttgactcagatgtgagtccaacaagaggcagaatagaagacattcttgtgactgg |
45109546 |
T |
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| Q |
114 |
aaagaacaaaaatgccaaacatatgtttcctatgtaagcaagtctcaaagatacactcctcaactttgcttcccatctattaccaagaccaataatcaat |
213 |
Q |
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| T |
45109545 |
aaagaacaaaaatgccaaacatatgtttcctatgtaagcaagtctcaaagatacactcctcaactttgcttcccatctattaccaagaccaataatcaat |
45109446 |
T |
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| Q |
214 |
acaccaaattatacaataatctttatttcatgtagtt |
250 |
Q |
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| T |
45109445 |
acaccaaattatacaataatctttatttcatgtagtt |
45109409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 45126839 - 45126663
Alignment:
| Q |
16 |
agaaccatagataaatgtccaagccagatatgatacttgatgcttgactcagatgtgagtccaacaagaggcagaatagaagacattcttgtgactggaa |
115 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| || |||| |
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| T |
45126839 |
agaaccatagataattgtccaagccagatatgatatttgatgcttgactcagatgtgagtccaacaagacgcagaatggaagaccctcttgtaaccggaa |
45126740 |
T |
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| Q |
116 |
agaacaaaaatgccaaacatatgtttcctatgtaagcaagtctcaaagatacactcctcaactttgcttcccatcta |
192 |
Q |
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| T |
45126739 |
agaacaaaaatgcccaacatatgtttcctatgtaacctagtctcaaaaatacactcctgaacttcgcttcccatcta |
45126663 |
T |
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