View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_112 (Length: 249)
Name: NF1643_high_112
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_112 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 34554236 - 34554020
Alignment:
| Q |
18 |
agatgcaaaatcttcaacaaaggaagatgaagatgagaaggaacattgagatgaaatgtcccaaccaacctcaaaacagtgagtgttttgcatgtataaa |
117 |
Q |
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| T |
34554236 |
agatgcaaaatcttcaacaaaggaagatgaagatgagaaggaacattgagatgaaatgtcccaaccaacctcaaaacagtgagtgttttgcatgtataaa |
34554137 |
T |
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| Q |
118 |
gctggtgaggcaaataaacttttaaacgatataaagagaggtctatctcgtcagctttttgagtagttgccatggaaactattgaactaaccaagtgagg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34554136 |
gctggtgaggcaaataaacttttaaacgatataaagagaggtctatctcgtaaactttttgagtagttgccatggaaactattgaactaaccaagtgagg |
34554037 |
T |
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| Q |
218 |
gatataagagttgttga |
234 |
Q |
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||||||| ||||||||| |
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| T |
34554036 |
gatataacagttgttga |
34554020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 36283501 - 36283292
Alignment:
| Q |
20 |
atgcaaaatcttcaacaaaggaagatgaagatgagaaggaacattgagatgaaatgtcccaaccaacctcaaaacagtgagtgttttgcatgtataaagc |
119 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| || || | |||| ||||||||||| |||||||| |||||||| ||| | ||| | |
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| T |
36283501 |
atgcaaaatcttcagcaaaggaagatgaagatgagaaggaaggttcaggtaaaatctcccaaccaacttcaaaacaacgagtgtttcgcaagcgaaaatc |
36283402 |
T |
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| Q |
120 |
tggtgaggcaaataaacttttaaacgatataaagagaggtctatctcgtcagctttttgagtagttgccatggaaactattgaactaaccaagtgaggga |
219 |
Q |
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| T |
36283401 |
tcacaaggcaaataaacttttaaactatataaagaaagatctatctcctcaactttttgtttacttgccatgcaaactattgaactaaccaagtgtggga |
36283302 |
T |
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| Q |
220 |
tataagagtt |
229 |
Q |
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||||| |||| |
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| T |
36283301 |
tataacagtt |
36283292 |
T |
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