View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1643_high_114 (Length: 248)
Name: NF1643_high_114
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_114 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 34214325 - 34214545
Alignment:
| Q |
17 |
aaaacttttgaaattggattactagtacctttaaaaccgtagatattgaaacaaagaaagtacgtttgaattgaaaataacattttttactcttttatga |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34214325 |
aaaacttgtgaaattggattactagtacctttaaaaccgtagatattgaaacaaagaaagtacgtttgaattgaaaataacattttttactcttttatga |
34214424 |
T |
|
| Q |
117 |
ttttaactacacacgttccaaattaattttcatatattcatatttgttttcttaactaataattgaagagtacttgttaacctttttcatttaaaaatta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34214425 |
ttttaactacacacgttccaaattaattttcatatattcatattttttttcttaactaataattgaagagtacgtgttaacctttttcatttaaaaatta |
34214524 |
T |
|
| Q |
217 |
gatgattaaaatcatatgaat |
237 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34214525 |
gatgattaaaatcatatgaat |
34214545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University