View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_118 (Length: 247)
Name: NF1643_high_118
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_118 |
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Alignment Details
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 25988489 - 25988594
Alignment:
| Q |
1 |
tcttgatataatggttattgtgttctaatggatccaagttcgttaacaaaaagcagtgttatttgtcgcaacattttagcacagaaaagactcatgatat |
100 |
Q |
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| T |
25988489 |
tcttgatataatggttattgtgttctaatggatccaagttcgctaacaaaaagcagtgttatttgtcgcaacattttagcacagaaaagactcatgatat |
25988588 |
T |
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| Q |
101 |
cttcct |
106 |
Q |
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|||||| |
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| T |
25988589 |
cttcct |
25988594 |
T |
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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 25988617 - 25988655
Alignment:
| Q |
200 |
tgtattacattataatttatgtgcttaaccaagattctg |
238 |
Q |
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| T |
25988617 |
tgtattacattataatttatgtgtttaaccaagattctg |
25988655 |
T |
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