View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_12 (Length: 560)
Name: NF1643_high_12
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 560
Target Start/End: Original strand, 24977969 - 24978511
Alignment:
| Q |
18 |
agacttagcatctgattgtgcctccaagtacttcaaaaccatagggtgcatattcatcttttcactgttatagtgtcaggatccaaagtgccatctgttg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
24977969 |
agacttagcatctgattgtgcctccaagtacttcaaaaccacagggtgcatattcatcttttcactctaatagtgtcaggatccaaagtgccatctgttg |
24978068 |
T |
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| Q |
118 |
tgtggtcagagtccaccacatctccccaaaatttactaagaatatggacaattttcttgtctgcctctgagcaatgcttacaactattagctttctgaat |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24978069 |
tgtggtcaaagtccaccacatctccccaaaatttactaagaatatggacaattttcttgcctgcctctgagcaatgcttacaactattagctttctgaat |
24978168 |
T |
|
| Q |
218 |
ttttccattgtttggttctgacatttcagtaacagtcacacgttccaccaatctattagtaaaaggcatcttagcagaagcactcacaaattccactaat |
317 |
Q |
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|||||||||||||||| || |||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24978169 |
ttttccattgtttggtcctaacatttcagtaatagtcacaggttccaccaatctatttgtaaaaggcatcttagcagaagcactcacaaattccactaat |
24978268 |
T |
|
| Q |
318 |
tgaacaacaaattggggcttcctttttcccaattcactagaaaactcacagtttgtgttgtccacaagacaagcactctccttggaaaccaatttctcag |
417 |
Q |
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| T |
24978269 |
tgaacaacaaatcgtggcttcctttttcccaattcactagaaaactcacagtttgtgttgtccacaagacaagcactctccttggaaaccaatttctcag |
24978368 |
T |
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| Q |
418 |
gttcagtgttatccaaagaaacctttaaattgatagttggaaccatgtgagtgtgaaaaaactcaccaaacggatgtttattttctacctcaagcatatt |
517 |
Q |
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| T |
24978369 |
gttcagtgttatccaaagaaaccttttaattgatatttggacccatgtgagctagacaaaactccccaaaaggatgtttattttctacttcaagcatatt |
24978468 |
T |
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| Q |
518 |
gaaagagatatgcagaactagtgttcaagaagcattttctttc |
560 |
Q |
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| T |
24978469 |
gaaagagttatgaagaactagtgttgaaggagcattttctttc |
24978511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 26 - 288
Target Start/End: Original strand, 16140520 - 16140777
Alignment:
| Q |
26 |
catctgattgtgcctccaagtacttcaaaaccatagggtgcatattcatcttttcactgttatagtgtcaggatccaaagtgccatctgttgtgtggtca |
125 |
Q |
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| T |
16140520 |
catctggttgtgcctccaaatactgcaaagccatagggtgcatattcatcttttctttgtcg--gtgtcaggatccatagtggcatttgtagtgt---ca |
16140614 |
T |
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| Q |
126 |
gagtccaccacatctccccaaaatttactaagaatatggacaattttcttgtctgcctctgagcaatgcttacaactattagctttctgaatttttccat |
225 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||| |||||||| ||||||||||||||||||| | |||||||||| |||| |||| | |
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| T |
16140615 |
gagtccaccacatcaccccaaaatttactaagaatttggacacttttcttgcttgcctctgagcaatgcttagagttattagctttatgaaaccttcctt |
16140714 |
T |
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| Q |
226 |
tgtttggttctgacatttcagtaacagtcacacgttccaccaatctattagtaaaaggcatct |
288 |
Q |
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| T |
16140715 |
tgtttggttctaacacttcagtaacagtcacaggttccaccaatttataagtaacaggcatct |
16140777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 24 - 318
Target Start/End: Complemental strand, 9057851 - 9057558
Alignment:
| Q |
24 |
agcatctgattgtgcctccaagtacttcaaaaccatagggtgcatattcatcttttcactgttatagtgtcaggatccaaagtgccatctgttgtgtggt |
123 |
Q |
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| T |
9057851 |
agcatctggttgagcctccaaatacttcaaagccacagggtgcatattcatcttttcattgtca--gtgtcaggatccataatgccatctgttgtgt--- |
9057757 |
T |
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| Q |
124 |
cagagtccaccacatctccccaaaatttactaagaatatggacaattttcttgtctgcctctgagcaatgcttacaactattagctttctgaatttttcc |
223 |
Q |
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||||||||||||||| || ||| ||||| ||||||| |||||| |||||||| ||||||||| ||||||||| | |||||||||||||||| |||| |
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| T |
9057756 |
cagagtccaccacataacctcaacatttattaagaatttggacacttttcttgcatgcctctgaacaatgcttagagttattagctttctgaatccttcc |
9057657 |
T |
|
| Q |
224 |
attgtttggttctgacatttcagtaacagtcacacgttccaccaatctattagtaa----aaggcatcttagcagaagcactcacaaattccactaatt |
318 |
Q |
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|||| |||| || ||| || ||||||||||||| ||||| | | ||||| ||| |||||||||||||||| |||||||| ||||| |||||| |
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| T |
9057656 |
tttgtctggtcctaacacttgagtaacagtcacaggttccttgattttattaataatagctaggcatcttagcagaaacactcacagattcctctaatt |
9057558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 4922699 - 4922567
Alignment:
| Q |
26 |
catctgattgtgcctccaagtacttcaaaaccatagggtgcatattcatcttttcactgttatagtgtcaggatccaaagtgccatctgttgtgtggtca |
125 |
Q |
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|||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| || | |||||| |||||| |||| ||||| ||||||||||| |
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| T |
4922699 |
catctggttgtgcctccaagtacttcaaagccacagggtgcatattcatcttttcaccgtca--gtgtcatgatccatagtgtcatctattgtgtggtca |
4922602 |
T |
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| Q |
126 |
gagtccaccacatctccccaaaatttactaagaat |
160 |
Q |
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| T |
4922601 |
gagtcctccacatcgccccaaaatttactaagaat |
4922567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 10502113 - 10502268
Alignment:
| Q |
24 |
agcatctgattgtgcctccaagtacttcaaaaccatagggtgcatattcatcttttcactgttatagtgtcaggatccaaagtgccatctgttgtgtggt |
123 |
Q |
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||||||| ||||||||||||| |||||||| ||| |||||||||||||||||||||||||| | |||||||| |||| |||| ||||||||||||||| |
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| T |
10502113 |
agcatctagttgtgcctccaagaacttcaaagccacagggtgcatattcatcttttcactgtca--gtgtcagggtccacagtgtcatctgttgtgtggt |
10502210 |
T |
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| Q |
124 |
cagagtccaccacatctccccaaaatttactaagaatatggacaattttcttgtctgc |
181 |
Q |
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||||||||||||||| ||| ||||||| |||||||| | |||| |||||||| |||| |
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| T |
10502211 |
tagagtccaccacatcccccgaaaatttgctaagaattttgacacttttcttggctgc |
10502268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 32230121 - 32230277
Alignment:
| Q |
23 |
tagcatctgattgtgcctccaagtacttcaaaaccatagggtgcatattcatcttttcactgttatagtgtcaggatccaaagtgccatctgttgtgtgg |
122 |
Q |
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||||||| ||||||||| ||||| |||||| | ||| |||||||||||||||| ||||| ||| | |||||| | |||| |||||||||||| |||||| |
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| T |
32230121 |
tagcatccgattgtgccaccaagaacttcagagccacagggtgcatattcatcatttcagtgtca--gtgtcaaggtccatagtgccatctgtcgtgtgg |
32230218 |
T |
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| Q |
123 |
tcagagtccaccacatctccccaaaatttactaagaatatggacaattttcttgtctgc |
181 |
Q |
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||||| ||||||||||| ||||||||||| |||||||| ||| || |||||||| |||| |
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| T |
32230219 |
tcagaatccaccacatccccccaaaatttgctaagaatttgggcacttttcttggctgc |
32230277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 30426270 - 30426421
Alignment:
| Q |
23 |
tagcatctgattgtgcctccaagtacttcaaaaccatagggtgcatattcatcttttcactgttatagtgtcaggatccaaagtgccatctgttgtgtgg |
122 |
Q |
| |
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||||||||| ||||||| |||| |||||| | ||| |||||||||||||||| ||||| ||| | |||||| | |||| |||||||||||| |||||| |
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| T |
30426270 |
tagcatctggttgtgccatcaagaacttcagagccacagggtgcatattcatcatttcagtgtca--gtgtcaaggtccatagtgccatctgtcgtgtgg |
30426367 |
T |
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| Q |
123 |
tcagagtccaccacatctccccaaaatttactaagaatatggacaattttcttg |
176 |
Q |
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||||| |||||||| || | ||||||||| |||||||| ||| || |||||||| |
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| T |
30426368 |
tcagaatccaccacgtccctccaaaatttgctaagaatttgggcacttttcttg |
30426421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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