View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_125 (Length: 239)
Name: NF1643_high_125
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_125 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 24525806 - 24526046
Alignment:
| Q |
1 |
aataaatgatgacaccattatgtctatgcaaaacaattagagaaatgtagacactgtaatatcgaatattatgtatgttatcaatccgtcattaacaata |
100 |
Q |
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| T |
24525806 |
aataaatgatgacaccattatgtctatgcaaaataattagagaaatgtagacaccttaatatcgaatattatgtatgttatcaatccgtcattaacaata |
24525905 |
T |
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| Q |
101 |
tgtatcttccatatggttgcgcatt------------atgt-----ctagagaaacttctttcatcatttgcactcgccacaagcaacaataatgctagc |
183 |
Q |
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| T |
24525906 |
tatatcttccatatggttgcgcatttgactatccataacgtttctagtagaaaaacttctttcatcatttgcactcgccacaagcaacaataatgctagc |
24526005 |
T |
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| Q |
184 |
ttcaaaagtaagtgcaacattggataaccaacatgttttct |
224 |
Q |
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| T |
24526006 |
ttcaaaagtaagtgcaacattggataaccaacatgttttct |
24526046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 24532477 - 24532717
Alignment:
| Q |
1 |
aataaatgatgacaccattatgtctatgcaaaacaattagagaaatgtagacactgtaatatcgaatattatgtatgttatcaatccgtcattaacaata |
100 |
Q |
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| T |
24532477 |
aataaatgatgacaccattatgtctatgcaaaacaattagagaaatgtagacaccttaatatcgaatattatgtatgttatcaatccatcattaacaata |
24532576 |
T |
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| Q |
101 |
tgtatcttccatatggttgcgcatt------------atgt-----ctagagaaacttctttcatcatttgcactcgccacaagcaacaataatgctagc |
183 |
Q |
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| T |
24532577 |
tatatcttccatatggttgcacatttgactatccataacgtttctagtagagaaacttctttcatcatttgcactcgccacaagcaacaataatgctagc |
24532676 |
T |
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| Q |
184 |
ttcaaaagtaagtgcaacattggataaccaacatgttttct |
224 |
Q |
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| T |
24532677 |
ttcaaaactaagtgcgacattggataaccaacatgttttct |
24532717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 290918 - 290991
Alignment:
| Q |
137 |
aacttctttcatcatttgcactcgccacaagcaacaataatgctagcttcaaaagtaagtgcaacattggataa |
210 |
Q |
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| T |
290918 |
aacttctttcttcatttgcactcgccacacgcaataataatgctagcttcaaaagtaagtgcatcattggataa |
290991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 290757 - 290821
Alignment:
| Q |
4 |
aaatgatgacaccattatgtctatgcaaaacaattagagaaatgtagacactgtaatatcgaata |
68 |
Q |
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| T |
290757 |
aaatgatgacaccgttatctttaagaaaaataattagagaaatgtagacaccttaatatcgaata |
290821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 290842 - 290890
Alignment:
| Q |
70 |
tatgtatgttatcaatccgtcattaacaatatgtatcttccatatggtt |
118 |
Q |
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| T |
290842 |
tatgtatgttaccaatcaatcattaacaatatatatcttccatgtggtt |
290890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 8354467 - 8354559
Alignment:
| Q |
132 |
agagaaacttctttcatcatttgcactcgccacaagcaacaataatgctagcttcaaaagtaagtgcaacattggataaccaacatgttttct |
224 |
Q |
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||||||||| |||||| || ||||| | |||||| | || | |||||||| |||||||||||| | || |||||||||| ||| |||| |||| |
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| T |
8354467 |
agagaaactcctttcaacagttgcagtagccacaggtaaaagtaatgctaacttcaaaagtaaatacaccattggataagcaatatgtcttct |
8354559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 14460469 - 14460561
Alignment:
| Q |
132 |
agagaaacttctttcatcatttgcactcgccacaagcaacaataatgctagcttcaaaagtaagtgcaacattggataaccaacatgttttct |
224 |
Q |
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||||||||| |||||| || ||||| | |||||| | || | |||||||| |||||||||||| | || |||||||||| ||| |||| |||| |
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| T |
14460469 |
agagaaactcctttcaacagttgcagtagccacaggtaaaagtaatgctaacttcaaaagtaaatacaccattggataagcaatatgtcttct |
14460561 |
T |
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