View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_127 (Length: 238)
Name: NF1643_high_127
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_127 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 49546858 - 49546991
Alignment:
| Q |
16 |
caccagctttaaacagtccatcaaaaatatcaacagagttcactccgctacctttgcattgagagcagacaatagctcctgttaattgcacaaaatatat |
115 |
Q |
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| T |
49546858 |
caccagctttaaacagtccatcaaaaatatcaacagagttcactccgctacctttgcattgagaacagacaatagctcctgttaattgcacaaaatatat |
49546957 |
T |
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| Q |
116 |
tttcaccttcaagaaccgctaatacaatacaaga |
149 |
Q |
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| T |
49546958 |
tttcaccttcaagaaccgctaatacaatacaaga |
49546991 |
T |
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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 49547039 - 49547137
Alignment:
| Q |
144 |
acaagagtaaattaaaattgaatagt----tactagctaaccacatgacatcttaccatttccatcacaatcagcacaaatgacactatttggttttgt |
238 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49547039 |
acaaaagtaaattaaaattgaatagttagttactagctaaccacatgacatcttaccatttccatcacaatcagcacaaatgacactatttggttttgt |
49547137 |
T |
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