View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_130 (Length: 237)
Name: NF1643_high_130
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_130 |
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Alignment Details
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 36845957 - 36846069
Alignment:
| Q |
14 |
agcacagaccgaagaatgacggagtttattgtcccacatcgataactaatggtagaatagagaggagccttggttatatagttaaaggccgtggagagat |
113 |
Q |
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| T |
36845957 |
agcaaagaccgaagaatgacggagtttattgtcccacatcgataactaatggtagaatagagaggagccttgattatatagttaaaggccgtggagagat |
36846056 |
T |
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| Q |
114 |
ttaaagaacagtt |
126 |
Q |
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| T |
36846057 |
ttaaagaacagtt |
36846069 |
T |
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Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 36846101 - 36846200
Alignment:
| Q |
123 |
agttttatacggtttttcattctagctagttgagtgagatggttggtatggttctattaccttattgacttgatttaattagctcagtagtgaagaactt |
222 |
Q |
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| T |
36846101 |
agttttaaacggttttttattctagctagttgagtgagatggttggtatggttctattaccttattgacttgatttaattagctcagtagtgaagaactt |
36846200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 36847825 - 36847884
Alignment:
| Q |
14 |
agcacagaccgaagaatgacggagtttattgtcccacatcgataactaatggtagaatag |
73 |
Q |
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| T |
36847825 |
agcacataccgaagaatgactgagtttattgtcccacatcgataactaacgctagaatag |
36847884 |
T |
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