View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_high_133 (Length: 235)

Name: NF1643_high_133
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_high_133
NF1643_high_133
[»] chr1 (2 HSPs)
chr1 (92-220)||(18902739-18902867)
chr1 (86-217)||(18154013-18154144)
[»] chr8 (4 HSPs)
chr8 (91-220)||(3896439-3896568)
chr8 (113-220)||(6820291-6820398)
chr8 (112-220)||(44669677-44669785)
chr8 (86-212)||(5536246-5536372)
[»] chr7 (9 HSPs)
chr7 (86-217)||(12527876-12528007)
chr7 (91-220)||(28384845-28384975)
chr7 (91-217)||(12502247-12502373)
chr7 (91-220)||(26262378-26262506)
chr7 (86-220)||(16422435-16422565)
chr7 (91-220)||(36018683-36018811)
chr7 (96-220)||(16484758-16484885)
chr7 (113-220)||(21267114-21267221)
chr7 (113-220)||(48185829-48185936)
[»] chr3 (3 HSPs)
chr3 (86-216)||(19933529-19933659)
chr3 (111-222)||(1312231-1312342)
chr3 (95-217)||(11034125-11034246)
[»] chr2 (3 HSPs)
chr2 (111-222)||(2039795-2039906)
chr2 (110-220)||(29962243-29962353)
chr2 (113-180)||(2584314-2584381)
[»] scaffold0172 (1 HSPs)
scaffold0172 (91-213)||(33790-33912)
[»] chr4 (2 HSPs)
chr4 (86-220)||(28653602-28653740)
chr4 (91-220)||(52945630-52945758)
[»] chr6 (5 HSPs)
chr6 (113-220)||(34517004-34517111)
chr6 (86-220)||(3510554-3510684)
chr6 (121-220)||(34513944-34514043)
chr6 (91-219)||(15278638-15278766)
chr6 (96-217)||(8910839-8910958)
[»] scaffold0003 (1 HSPs)
scaffold0003 (86-220)||(11147-11277)
[»] scaffold0655 (1 HSPs)
scaffold0655 (113-220)||(8358-8465)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 18902867 - 18902739
Alignment:
Q  92 taataacaagacactgggcttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaataccag 191  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||    
T  18902867 taataacaagacacttggcctttttcctacccaagactacacctaactggtcaaggttctggatgcttgtggaaagttttctcaacaaggctaataccag 18902768  T
Q  192 tttcggaatatatcaagcctccaaatgtg 220  Q
    | |||||||||||||||||||||||||||    
T  18902767 tgtcggaatatatcaagcctccaaatgtg 18902739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 18154144 - 18154013
Alignment:
Q  86 tatctctaataacaagacactgggcttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaa 185  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||    
T  18154144 tatccctaataacaagacacttggcctttttcctacccaagactacacctagctggtcaaagttctggatgcttgtgaaaagttttgtcaacaaggctaa 18154045  T
Q  186 taccagtttcggaatatatcaagcctccaaat 217  Q
    ||||||| ||||||||||||||||||||||||    
T  18154044 taccagtgtcggaatatatcaagcctccaaat 18154013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 91 - 220
Target Start/End: Original strand, 3896439 - 3896568
Alignment:
Q  91 ctaataacaagacactgggcttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaatacca 190  Q
    |||||| |||| | || ||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3896439 ctaatagcaaggctcttggccttttttctacccaagactacacctagctggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaatacca 3896538  T
Q  191 gtttcggaatatatcaagcctccaaatgtg 220  Q
    || |||||||||||||||||||||||||||    
T  3896539 gtgtcggaatatatcaagcctccaaatgtg 3896568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 6820398 - 6820291
Alignment:
Q  113 ttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaataccagtttcggaatatatcaagcctc 212  Q
    |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6820398 tttttctacccaacactacacctaactggtcaaagttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcctc 6820299  T
Q  213 caaatgtg 220  Q
    ||||||||    
T  6820298 caaatgtg 6820291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 44669785 - 44669677
Alignment:
Q  112 tttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaataccagtttcggaatatatcaagcct 211  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||    
T  44669785 ttttttctacccaagactacacctagctggtcaaagttctggatgcttgtgaaaagttttctcatcaaagctaataccactgtcggaatatatcaagcct 44669686  T
Q  212 ccaaatgtg 220  Q
    |||||||||    
T  44669685 ccaaatgtg 44669677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 86 - 212
Target Start/End: Original strand, 5536246 - 5536372
Alignment:
Q  86 tatctctaataacaagacactgggcttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaa 185  Q
    |||| |||||||||||||||| | | |||||||| | |||||||||||||| |   |||||||| ||||||||||||||||||||| |||||||||||||    
T  5536246 tatccctaataacaagacacttgacctttttccttctcaagactacacctagccaatcaaagttgtggatgcttgtgaaaagttttttcaacaaggctaa 5536345  T
Q  186 taccagtttcggaatatatcaagcctc 212  Q
    ||||||| ||||||||||| |||||||    
T  5536346 taccagtgtcggaatatatgaagcctc 5536372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 12527876 - 12528007
Alignment:
Q  86 tatctctaataacaagacactgggcttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaa 185  Q
    |||| |||||||||||| ||| ||| ||||||||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  12527876 tatccctaataacaagatacttggcctttttcctacccaaggctacacctagctggtcaaagttctggatgcttgtaaaaagttttctcaacaaggctaa 12527975  T
Q  186 taccagtttcggaatatatcaagcctccaaat 217  Q
    ||||||| ||||||||||||||||||||||||    
T  12527976 taccagtgtcggaatatatcaagcctccaaat 12528007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 28384975 - 28384845
Alignment:
Q  91 ctaataacaagacactgggcttttttc-ctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaatacc 189  Q
    |||||||||||||||| | |||||||  ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  28384975 ctaataacaagacacttgacttttttttctacccaagactacacctaactggtcaaaattctggttgcttgtgaaaagttttctcaacaaggctaatacc 28384876  T
Q  190 agtttcggaatatatcaagcctccaaatgtg 220  Q
    ||| |||||||||| ||||||||||||||||    
T  28384875 agtgtcggaatataccaagcctccaaatgtg 28384845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 91 - 217
Target Start/End: Original strand, 12502247 - 12502373
Alignment:
Q  91 ctaataacaagacactgggcttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaatacca 190  Q
    |||||||||||| ||| ||| ||||||||||||||||||||||||| |||||||||||| |||||| |||| |||||||||||||| |||||||||||||    
T  12502247 ctaataacaagatacttggcctttttcctacccaagactacacctagctggtcaaagttctggatgattgtaaaaagttttctcaataaggctaatacca 12502346  T
Q  191 gtttcggaatatatcaagcctccaaat 217  Q
    || || |||||||||||||||||||||    
T  12502347 gtgtcagaatatatcaagcctccaaat 12502373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 91 - 220
Target Start/End: Original strand, 26262378 - 26262506
Alignment:
Q  91 ctaataacaagacactgggcttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaatacca 190  Q
    |||||| ||||||| | ||| |||||| |||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||| |    
T  26262378 ctaatatcaagacatttggcctttttc-tacccaagactacacctaactggtcaaagttccggatgcttgtgaaaatttttctcaacaaggctaatacta 26262476  T
Q  191 gtttcggaatatatcaagcctccaaatgtg 220  Q
    || |||||||||||||||||||||||||||    
T  26262477 gtgtcggaatatatcaagcctccaaatgtg 26262506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 16422565 - 16422435
Alignment:
Q  86 tatctctaataacaagacactgggcttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaa 185  Q
    |||| |||||||||||||||| | |||||| |||||| ||||||||||||| ||   ||||||| | |||||||||||||||||||||||||||||||||    
T  16422565 tatccctaataacaagacacttgccttttt-cctacctaagactacacctagct---caaagttctagatgcttgtgaaaagttttctcaacaaggctaa 16422470  T
Q  186 taccagtttcggaatatatcaagcctccaaatgtg 220  Q
    ||||||| |||||||||||| ||||||||||||||    
T  16422469 taccagtgtcggaatatatcgagcctccaaatgtg 16422435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 36018811 - 36018683
Alignment:
Q  91 ctaataacaagacactgggcttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaatacca 190  Q
    |||||| ||||||| | ||| |||||| |||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| |    
T  36018811 ctaatatcaagacatttggcctttttc-tacccaagactacatctagctggtcaaagtttcggatgcttgtgaaaagttttttcaacaaggctaatacta 36018713  T
Q  191 gtttcggaatatatcaagcctccaaatgtg 220  Q
    || |  ||||||||||||||||||||||||    
T  36018712 gtgttagaatatatcaagcctccaaatgtg 36018683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 220
Target Start/End: Complemental strand, 16484885 - 16484758
Alignment:
Q  96 aacaagacactgggc--ttttttc-ctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaataccagt 192  Q
    ||||||||||| |||  ||||||| |||||||||| || ||||| |||| || ||||| ||||||||| |||||||||||||| |||||||||||||| |    
T  16484885 aacaagacacttggcccttttttctctacccaagaataaacctagctggccatagtttcggatgcttgcgaaaagttttctcatcaaggctaataccact 16484786  T
Q  193 ttcggaatatatcaagcctccaaatgtg 220  Q
     ||||||| |||||||||||||||||||    
T  16484785 gtcggaatttatcaagcctccaaatgtg 16484758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 21267114 - 21267221
Alignment:
Q  113 ttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaataccagtttcggaatatatcaagcctc 212  Q
    |||||||||||||||| |  ||||  |||||| |||| |||||||||||||||||||||||||||||| ||||||| ||| || ||| |||  |||||||    
T  21267114 ttttcctacccaagacaaatcctagttggtcatagttgtggatgcttgtgaaaagttttctcaacaagactaatactagtgtcagaaaatagtaagcctc 21267213  T
Q  213 caaatgtg 220  Q
    ||||||||    
T  21267214 caaatgtg 21267221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 48185829 - 48185936
Alignment:
Q  113 ttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaataccagtttcggaatatatcaagcctc 212  Q
    |||||||||||||||| |  |||| ||||||| ||   ||||||||||||||||||||||| |||||| ||||||||||| || ||| |||  ||| |||    
T  48185829 ttttcctacccaagacaaatcctagctggtcatagcggtggatgcttgtgaaaagttttcttaacaagactaataccagtgtcagaaaatagtaagactc 48185928  T
Q  213 caaatgtg 220  Q
    ||||||||    
T  48185929 caaatgtg 48185936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 19933659 - 19933529
Alignment:
Q  86 tatctctaataacaagacactgggcttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaa 185  Q
    |||| |||||||||||||| | ||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||    
T  19933659 tatccctaataacaagacaattggcctttttcctacccaagactacacctaactggtcaaggttctggatgcttgtgaaaatttttctcaacaaggctaa 19933560  T
Q  186 taccagtttcggaatatatcaagcctccaaa 216  Q
    ||||||| | |||||||||||||||||||||    
T  19933559 taccagtgttggaatatatcaagcctccaaa 19933529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 1312342 - 1312231
Alignment:
Q  111 ttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaataccagtttcggaatatatcaagcc 210  Q
    |||||| ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1312342 tttttttctacccaagactacacctagctggtcaaagttctagatgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcc 1312243  T
Q  211 tccaaatgtgtg 222  Q
    ||||||||||||    
T  1312242 tccaaatgtgtg 1312231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 11034125 - 11034246
Alignment:
Q  95 taacaagacactgggcttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaataccagttt 194  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| |    
T  11034125 taactagacacttggcctttttcctacccaagactacacctaactggtcaaagttctggatacttgtgaaaag-tttctcaacaaggctaataccagtgt 11034223  T
Q  195 cggaatatatcaagcctccaaat 217  Q
    |||||||||||||||||||||||    
T  11034224 cggaatatatcaagcctccaaat 11034246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 2039906 - 2039795
Alignment:
Q  111 ttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaataccagtttcggaatatatcaagcc 210  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  2039906 ttttttcctacctaagactacacctagctggtcaaagttctggatgcttgtgaaaagttttctcaacaaggttaataccagtgtcggaatatatcaagcc 2039807  T
Q  211 tccaaatgtgtg 222  Q
    ||| ||||||||    
T  2039806 tccgaatgtgtg 2039795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 29962243 - 29962353
Alignment:
Q  110 cttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaataccagtttcggaatatatcaagc 209  Q
    ||||||| ||| | ||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29962243 ctttttttctatctaagactacacctagctggtcaaagttctagatgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcaagc 29962342  T
Q  210 ctccaaatgtg 220  Q
    |||| ||||||    
T  29962343 ctccgaatgtg 29962353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 2584314 - 2584381
Alignment:
Q  113 ttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaag 180  Q
    |||||||||||||||| |  |||| ||||||| |||| ||||||||||||||||||||| ||||||||    
T  2584314 ttttcctacccaagacaaatcctagctggtcatagttgtggatgcttgtgaaaagttttttcaacaag 2584381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 33790 - 33912
Alignment:
Q  91 ctaataacaagacactgggcttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaatacca 190  Q
    |||||| |||| | || ||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  33790 ctaatagcaaggctcttggctttttttctacctaagactacacctagctggtcaaagttctggatgcttgtgaaaagttttctcaacaaggctgatacca 33889  T
Q  191 gtttcggaatatatcaagcctcc 213  Q
    || ||||||||||||||||||||    
T  33890 gtgtcggaatatatcaagcctcc 33912  T

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Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 28653602 - 28653740
Alignment:
Q  86 tatctctaataacaagacactgggcttttttcctacccaagactacacctaact----ggtcaaagttttggatgcttgtgaaaagttttctcaacaagg 181  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||||||||| ||    |||||||||| ||||||||||||||||||||| | |||||||    
T  28653602 tatccctaataacaagacacttggcctttttcctacccaagactacacctagctagctggtcaaagttctggatgcttgtgaaaagtttttttaacaagg 28653701  T
Q  182 ctaataccagtttcggaatatatcaagcctccaaatgtg 220  Q
    ||||||||| | |||||||||||||| ||||||||||||    
T  28653702 ctaataccattgtcggaatatatcaaacctccaaatgtg 28653740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 52945758 - 52945630
Alignment:
Q  91 ctaataacaagacactgggcttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaatacca 190  Q
    |||||||||||||||| | | |||||| |||| || ||||||| ||  | ||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  52945758 ctaataacaagacacttgacctttttc-tacctaatactacacttaggtcgtcgaagttctggatgcttgtgaaaagttttctcaacaaggctaatacca 52945660  T
Q  191 gtttcggaatatatcaagcctccaaatgtg 220  Q
    || || || || ||||||||||||||||||    
T  52945659 gtgtcagagtaaatcaagcctccaaatgtg 52945630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 34517004 - 34517111
Alignment:
Q  113 ttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaataccagtttcggaatatatcaagcctc 212  Q
    |||| ||||||||||||||||||| |||||||||||   |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34517004 tttttctacccaagactacacctagctggtcaaagtaccggatgcatgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcctc 34517103  T
Q  213 caaatgtg 220  Q
    ||||||||    
T  34517104 caaatgtg 34517111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 3510684 - 3510554
Alignment:
Q  86 tatctctaataacaagacactgggcttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaa 185  Q
    |||| |||||||||||||||| | |||||| |||||| ||||||||||||| ||   ||||||| | ||||||||||||||||||||||||||||| |||    
T  3510684 tatccctaataacaagacacttgccttttt-cctacctaagactacacctagct---caaagttctagatgcttgtgaaaagttttctcaacaaggttaa 3510589  T
Q  186 taccagtttcggaatatatcaagcctccaaatgtg 220  Q
    ||||| | |||||||||||||||||||||||||||    
T  3510588 taccaatgtcggaatatatcaagcctccaaatgtg 3510554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 34513944 - 34514043
Alignment:
Q  121 cccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaataccagtttcggaatatatcaagcctccaaatgtg 220  Q
    |||||||||||||||| ||||||||||||  |||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  34513944 cccaagactacacctagctggtcaaagttccggatgcatgtgaaatgttttctcaacaaggctaataccactgtcggaatatatcaagcctccaaatgtg 34514043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 15278766 - 15278638
Alignment:
Q  91 ctaataacaagacactgggc-ttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaatacc 189  Q
    ||||||||||||||||  || |||||| ||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||    
T  15278766 ctaataacaagacacttagcctttttttctacccaagactacacctagctggtcaa-gttctagatgcttgtgaaaagttttctcaacaaggctaatacc 15278668  T
Q  190 agtttcggaatatatcaagcctccaaatgt 219  Q
    | | || |||||||| || |||||||||||    
T  15278667 attgtcagaatatataaaacctccaaatgt 15278638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 8910958 - 8910839
Alignment:
Q  96 aacaagacactgggcttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaataccagtttc 195  Q
    ||||||||||| | | |||||| |||||||||||| ||||| ||||||| |||| |||||||||| |||||||||| |||||||||||||||| ||| ||    
T  8910958 aacaagacacttgtcctttttc-tacccaagactaaacctatctggtcatagttctggatgcttgcgaaaagtttt-tcaacaaggctaatactagtgtc 8910861  T
Q  196 ggaatatatcaagcctccaaat 217  Q
      ||||||||||| ||||||||    
T  8910860 ataatatatcaagtctccaaat 8910839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 11277 - 11147
Alignment:
Q  86 tatctctaataacaagacactgggcttttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaa 185  Q
    |||| |||||||||||||||| | |||||| |||||| ||||||||||||| ||   ||||||| | |||||||||||||||||||||||||||||||||    
T  11277 tatccctaataacaagacacttgccttttt-cctacctaagactacacctagct---caaagttctagatgcttgtgaaaagttttctcaacaaggctaa 11182  T
Q  186 taccagtttcggaatatatcaagcctccaaatgtg 220  Q
    ||||||| |||||||||||| ||||||||||||||    
T  11181 taccagtgtcggaatatatcgagcctccaaatgtg 11147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 8465 - 8358
Alignment:
Q  113 ttttcctacccaagactacacctaactggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaataccagtttcggaatatatcaagcctc 212  Q
    |||| |||||||||| || ||||||||||||| ||||  ||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||| |||    
T  8465 tttttctacccaagagtaaacctaactggtcatagttccggatgcttgtgaaaagttttctcaagaaggctaatatcagtgtcggaatatatcaagtctc 8366  T
Q  213 caaatgtg 220  Q
     |||||||    
T  8365 taaatgtg 8358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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