View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_141 (Length: 232)
Name: NF1643_high_141
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_141 |
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| [»] chr3 (9 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 4613824 - 4614043
Alignment:
| Q |
13 |
aaaactcaaattcggaagctagcttctcaatcaaatctaaaaatccatcttctgcatcaggaagaaaaaggtaaaaagagaatcgacgctttcctccacc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4613824 |
aaaactcaaattcggaagctagcttctcaatcaaatctaacaatccatcttctgcatcaggaagaaaaaggtaaaaagagaatcgacgctttcctccacc |
4613923 |
T |
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| Q |
113 |
ttgctcaaaaggaagacgaagaatcttaaaatcatcaaaaacaccgataaactgctcctcacagctggtcatgaagggaaccttaacagagttgcaattc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
4613924 |
ttgctcaaaaggaagacgaagaatcttaaaatcatcaaaaacaccgataaactgctcctcacaactagtcatgaagggaaccttaacagagttgcaattc |
4614023 |
T |
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| Q |
213 |
tgaatatgaaaatcattgtc |
232 |
Q |
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|||||||||||||||||||| |
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| T |
4614024 |
tgaatatgaaaatcattgtc |
4614043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 4581370 - 4581517
Alignment:
| Q |
16 |
actcaaattcggaagctagcttctcaatcaaatctaaaaatccatcttctgcatcaggaagaaaaaggtaaaaagagaatcgacgctttcctccaccttg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4581370 |
actcaaattcggaagctagcttctcaatcaaatctaacaatccatcttctgcatcaggaagaaaaaggtaaaaagagaatcgacgctttcctccaccttg |
4581469 |
T |
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| Q |
116 |
ctcaaaaggaagacgaagaatcttaaaatcatcaaaaacaccgataaa |
163 |
Q |
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| T |
4581470 |
ctcaaaaggaagatgaagaatcttaaaaccatcaaaaacaccgataaa |
4581517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 46532036 - 46531874
Alignment:
| Q |
36 |
ttctcaatcaaatctaaaaatccatcttctgcatcaggaagaaaaaggtaaaaagagaatcgacgctttcctccaccttgctcaaaaggaagacgaagaa |
135 |
Q |
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|||||||||||| |||| |||||||||| |||||| |||||||||| ||| | ||||||| |||| | | ||||||| | ||||||||||||| | |
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| T |
46532036 |
ttctcaatcaaagctaacaatccatcttgtgcatcgggaagaaaaaagtacatagagaattgacgaatatcgttgccttgcttataaggaagacgaagga |
46531937 |
T |
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| Q |
136 |
tcttaaaatcatcaaaaacaccgataaactgctcctcacagctggtcatgaagggaaccttaa |
198 |
Q |
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| T |
46531936 |
tcttaaaaccatcaaaagcatttataaactgcttcttcttgctagtcatgaagggaaccttaa |
46531874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 46554273 - 46554355
Alignment:
| Q |
114 |
tgctcaaaaggaagacgaagaatcttaaaatcatcaaaaacaccgataaactgctcctcacagctggtcatgaagggaacctt |
196 |
Q |
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| T |
46554273 |
tgctcataaggaagacgaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctggtcttgaagggaacctt |
46554355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 46544611 - 46544531
Alignment:
| Q |
14 |
aaactcaaattcggaagctagcttctcaatcaaatctaaaaatccatcttctgcatcaggaagaaaaaggtaaaaagagaa |
94 |
Q |
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||||||| |||| ||||||| ||| ||| ||||| |||| || ||||||| ||||||||||||||||| ||||| |||||| |
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| T |
46544611 |
aaactcagattcagaagctaccttttcagtcaaagctaacaacccatcttttgcatcaggaagaaaaaagtaaatagagaa |
46544531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 51943986 - 51943847
Alignment:
| Q |
57 |
ccatcttctgcatcaggaagaaaaaggtaaaaagagaatcgacgctttcctccaccttgctcaaaaggaagacgaagaatcttaaaatcatcaaaaacac |
156 |
Q |
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| T |
51943986 |
ccatcttttgcatttggaagaaaaaaatacatagagaattggcgcttatcttcacctttcttataaggaagatgaagaactttaaaatcatcataaactt |
51943887 |
T |
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| Q |
157 |
cgataaactgctcctcacagctggtcatgaagggaacctt |
196 |
Q |
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| T |
51943886 |
caataaactgcttcttattgctggtcatgaagggaacctt |
51943847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 4581564 - 4581610
Alignment:
| Q |
170 |
ctcacagctggtcatgaagggaaccttaacagagttgcaattctgaa |
216 |
Q |
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| T |
4581564 |
ctcacaactggtcatgaagggaacctaaacagagttgccattctgaa |
4581610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 45883763 - 45883831
Alignment:
| Q |
56 |
tccatcttctgcatcaggaagaaaaaggtaaaaagagaatcgacgctttcctccaccttgctcaaaagg |
124 |
Q |
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| T |
45883763 |
tccatcttttgcatttggaagaaaaaagtacatagagaatcgacgcttatctccaccttgctcataagg |
45883831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 45903035 - 45902911
Alignment:
| Q |
72 |
ggaagaaaaaggtaaaaagagaatcgacgctttcctccaccttgctcaaaaggaagacgaagaatcttaaaatcatcaaaaacaccgataaactg-ctcc |
170 |
Q |
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|||||||||| || | ||||||| ||||||| || | ||||||||| ||||||||||||| | || ||| |||| ||||| | ||||||||| ||| |
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| T |
45903035 |
ggaagaaaaatatacatagagaattgacgcttatcttctccttgctcataaggaagacgaagtactttgaaaccatcgaaaacgcggataaactgcctct |
45902936 |
T |
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| Q |
171 |
tcacagctggtcatgaagggaacctt |
196 |
Q |
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|| | ||||||||||||||||||||| |
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| T |
45902935 |
tctc-gctggtcatgaagggaacctt |
45902911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 21464175 - 21464358
Alignment:
| Q |
13 |
aaaactcaaattcggaagctagcttctcaatcaaatctaaaaatccatcttctgcatcaggaagaaaaaggtaaaaagagaatcgacgctttcctccacc |
112 |
Q |
| |
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|||||| | |||||||||| | ||||| ||||||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||| | || || |||| |
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| T |
21464175 |
aaaacttagattcggaagcaaccttcttaatcaaagctaacaatccatcttttgcatcaggaagaaaaaagtaaattgagaatcgatgtttgtcttcacc |
21464274 |
T |
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| Q |
113 |
ttgctcaaaaggaagacgaagaatcttaaaatcatcaaaaacaccgataaactgctcctcacagctggtcatgaagggaacctt |
196 |
Q |
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|||| | ||||||||||||| | |||||| |||||| ||||| |||| ||||| | || ||||||||||||| |||||||| |
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| T |
21464275 |
ttgcgtataaggaagacgaaggactttaaaaccatcaagaacactgatatactgcatcacatagctggtcatgaaaggaacctt |
21464358 |
T |
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