View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_143 (Length: 230)
Name: NF1643_high_143
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_143 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 35 - 215
Target Start/End: Original strand, 42039182 - 42039369
Alignment:
| Q |
35 |
atattctaaagtgacaaataatacgaatcaataaaatatttcataacaaattttgatacaatgtttgttcatttctctaagagtttggctaattggaagt |
134 |
Q |
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| T |
42039182 |
atattctaaagtgacaaataaaacgaatcaataaaatatttcataacaaattttgatacaatgtttgttcatttctctaagagtttggctaattggaagt |
42039281 |
T |
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| Q |
135 |
gaatgagtattaa-------ttttgactatatgttaatgcagaaaattgtataccagaaagtgttgtggcatcaatcacccatgatat |
215 |
Q |
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| T |
42039282 |
gaacgagtattaattttgatttttgactatatgttaatgcagaaaattgtataccagaaagtgttgtggcatcaatcacccatgatat |
42039369 |
T |
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