View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_145 (Length: 227)
Name: NF1643_high_145
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_145 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29341512 - 29341732
Alignment:
| Q |
1 |
agtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagaagttgaatatattgcttcaagggatgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29341512 |
agtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagatgttgaatatattgcttcaagggatgc |
29341611 |
T |
|
| Q |
101 |
tacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgagaatgaagtacatgaatgc |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29341612 |
taccatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcaaaaaaaggggtttaataggactcgagaatgaagtacatgaatgc |
29341711 |
T |
|
| Q |
201 |
ataacgaatgcacgttactta |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
29341712 |
ataacgaatgcacgttactta |
29341732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29357539 - 29357759
Alignment:
| Q |
1 |
agtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagaagttgaatatattgcttcaagggatgc |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29357539 |
agtttttgggatgcccatttccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagatgttgaatatattgcttcaagggatgc |
29357638 |
T |
|
| Q |
101 |
tacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgagaatgaagtacatgaatgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29357639 |
tacaatcacaggtagccgtagtgggcatgctccaatctttctttggtatgctctcaaaaaaaggggtttaataggactcgagaatgaagtacatgaatgc |
29357738 |
T |
|
| Q |
201 |
ataacgaatgcacgttactta |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
29357739 |
ataacgaatgcacgttactta |
29357759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 44660271 - 44660059
Alignment:
| Q |
1 |
agtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagaagttgaatatattgcttcaagggatgc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
44660271 |
agtttttgggatgcccatcaccttgtggtgttttgataactcgtttgaaatacatgaatgcactatctagagatgttgacatcattgcttcaagggatgc |
44660172 |
T |
|
| Q |
101 |
tacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgagaatgaagtacatgaatgc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||||| || ||||| || |||||||| |
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| T |
44660171 |
cacaatcacaggtagccgttgtgggcatgctcccatcttcctttggtatgctctcaaaaaaaggggtttaataggacttgaaaatgaggtgcatgaatgt |
44660072 |
T |
|
| Q |
201 |
ataacgaatgcac |
213 |
Q |
| |
|
|||| ||| |||| |
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|
| T |
44660071 |
ataatgaaagcac |
44660059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 44683416 - 44683204
Alignment:
| Q |
1 |
agtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagaagttgaatatattgcttcaagggatgc |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||| || | ||| |||||||||| |||| ||||||||||||||||| |
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| T |
44683416 |
agtttttgggatgcccatctccttgcggtgttgtgataactcgtttgaaatacatgagtgcgatatctagagatgttggcatcattgcttcaagggatgc |
44683317 |
T |
|
| Q |
101 |
tacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgagaatgaagtacatgaatgc |
200 |
Q |
| |
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|||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||||| || ||||| || |||||||| |
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| T |
44683316 |
cacaatcacaggtagccgttgtgggcatgctcccatcttcctttggtatgctctcaaaaaaaggggtttaataggacttgaaaatgaggtgcatgaatgt |
44683217 |
T |
|
| Q |
201 |
ataacgaatgcac |
213 |
Q |
| |
|
|||| ||| |||| |
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|
| T |
44683216 |
ataatgaaagcac |
44683204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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