View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_148 (Length: 214)
Name: NF1643_high_148
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_148 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 38072756 - 38072563
Alignment:
| Q |
18 |
tacagtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaagttcaccaagggttgcaccagattgaacccaagca |
117 |
Q |
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| T |
38072756 |
tacagtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaagttcaccaagggttgcaccagattgaacccaagca |
38072657 |
T |
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| Q |
118 |
gttctgttttctacatctacatcaatttctctaaagtttgtgagatcaatgattacaaaaggaacatttgaaacaaaggagagaccctcgaagt |
211 |
Q |
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| T |
38072656 |
gttctgttttctacatctacatcaattcctctaaagtttgtgagatcaatgattacaaaaggaacatttgaaacaaaggagagaccctcgaagt |
38072563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 38086266 - 38086102
Alignment:
| Q |
18 |
tacagtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaagttcaccaagggttgcaccagattgaacccaagca |
117 |
Q |
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| T |
38086266 |
tacagtaggacaaacacttgcagggaaaccaagagttttgcttttttggctaattgcgtagtaaagttcaccaagtgttgcaccagattgaacccatgca |
38086167 |
T |
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| Q |
118 |
gttctgttttctacatctacatcaatttctctaaagtttgtgagatcaatgattacaaaaggaac |
182 |
Q |
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| T |
38086166 |
gtttttttgtgtacatttatttcaatttctctgaagtttatgagatcaatgacaacaaatggaac |
38086102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 38062026 - 38062219
Alignment:
| Q |
18 |
tacagtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaagttcaccaagggttgcaccagattgaacccaagca |
117 |
Q |
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| T |
38062026 |
tacagtaggacaagcaccggcaggaaaaccaagatttcggctttttcggctaattgtgtagtaaagttcaccaagtgttgcaccagattgaacccaagca |
38062125 |
T |
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| Q |
118 |
gttctgttttctacatctacatcaatttctctaaagtttgtgagatcaatgattacaaaaggaacatttgaaacaaaggagagaccctcgaagt |
211 |
Q |
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| T |
38062126 |
gttcttttttctacatctattgtaatttctctgaagtatgtgaaatcaatgatgacaaatgggacttcagaaacataggaccgaccctcgaagt |
38062219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 38081837 - 38081648
Alignment:
| Q |
22 |
gtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaagttcaccaagggttgcaccagattgaacccaagcagttc |
121 |
Q |
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||||||||| |||| | |||||| ||||| || |||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
38081837 |
gtaggacaagcaccagctgggaaagcaagatttcggcttttttggctaattgtgtagtaaagttcaccaagtgttgcaccagactgaacccaagcagttc |
38081738 |
T |
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| Q |
122 |
tgttttctacatctacatcaatttctctaaagtttgtgagatcaatgattacaaaaggaacatttgaaacaaaggagagaccctcgaagt |
211 |
Q |
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| T |
38081737 |
tgctttctacatctacatcaatttccttgaagtttatgagatcaatgacaacaaatggaatttctgaaacataggataggccctcaaagt |
38081648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 38058425 - 38058280
Alignment:
| Q |
21 |
agtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaagttcaccaagggttgcaccagattgaacccaagcagtt |
120 |
Q |
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||||||||| |||| || || ||||||||| ||| | ||||| || |||| |||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
38058425 |
agtaggacattcaccacccggaaaaccaagattttggttttttcggtaaattgtgtagtaaagttcaccaattgttgcaccagattgaacccaagctgtc |
38058326 |
T |
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| Q |
121 |
ctgttttctacatctacatcaatttctctaaagtttgtgagatcaa |
166 |
Q |
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| T |
38058325 |
ctgttttctacatctacttcaatttctctgaagtttgtgagatcaa |
38058280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 37954086 - 37953905
Alignment:
| Q |
22 |
gtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaagttcaccaagggttgcaccagattgaacccaagcagttc |
121 |
Q |
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| T |
37954086 |
gtagggcaaatacctgcagggaagccaagagttttgcttttttggctaattttgtacaaaagttcgccagcagttgcccctccttgaacccatgcacttc |
37953987 |
T |
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| Q |
122 |
tgttttctacatctacatcaatttctctaaagtttgtgagatcaatgattacaaaaggaacatttgaaacaaaggagagacc |
203 |
Q |
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| T |
37953986 |
tcttttctacatctacttggacttctcgaaggtttataagatcaatgacaacaaatggaacttcagaaacataggacagacc |
37953905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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