View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_high_149 (Length: 212)

Name: NF1643_high_149
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_high_149
NF1643_high_149
[»] chr6 (3 HSPs)
chr6 (15-91)||(3185602-3185679)
chr6 (36-72)||(11942-11978)
chr6 (36-72)||(30639356-30639392)
[»] chr5 (4 HSPs)
chr5 (14-91)||(14434667-14434744)
chr5 (165-195)||(33210746-33210776)
chr5 (36-72)||(2315755-2315791)
chr5 (36-72)||(2642698-2642734)
[»] chr8 (3 HSPs)
chr8 (15-91)||(33881132-33881208)
chr8 (36-72)||(989510-989546)
chr8 (36-72)||(7839051-7839087)
[»] chr4 (3 HSPs)
chr4 (36-72)||(2034028-2034064)
chr4 (36-72)||(50064842-50064878)
chr4 (36-64)||(25537192-25537220)
[»] chr3 (3 HSPs)
chr3 (36-72)||(35126204-35126240)
chr3 (165-195)||(27045070-27045100)
chr3 (38-72)||(36431901-36431935)
[»] chr7 (1 HSPs)
chr7 (165-195)||(41968432-41968462)
[»] chr2 (1 HSPs)
chr2 (165-195)||(36754336-36754366)


Alignment Details
Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 3185602 - 3185679
Alignment:
Q  15 aatactcaaattaagtggttgaattaagagtgtcaatttaaaattacctta-aacttaaataagagatgaatgaacac 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  3185602 aatactcaaattaagtggttgaattaagagtgtcaatttaaaattaccttataactcaaataagagatgaatgaacac 3185679  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 11942 - 11978
Alignment:
Q  36 aattaagagtgtcaatttaaaattaccttaaacttaa 72  Q
    ||||||||||||||||||||||||||||| |||||||    
T  11942 aattaagagtgtcaatttaaaattaccttgaacttaa 11978  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 30639356 - 30639392
Alignment:
Q  36 aattaagagtgtcaatttaaaattaccttaaacttaa 72  Q
    ||||||||||||||||||||||||||||| |||||||    
T  30639356 aattaagagtgtcaatttaaaattaccttgaacttaa 30639392  T

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Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 14434667 - 14434744
Alignment:
Q  14 taatactcaaattaagtggttgaattaagagtgtcaatttaaaattaccttaaacttaaataagagatgaatgaacac 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||    
T  14434667 taatactcaaattaagtggttgaattaagagtgtcaatttaaaattagcttgaacttaaataagaaatgaatgaacac 14434744  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Complemental strand, 33210776 - 33210746
Alignment:
Q  165 ggaaacttctacggtacactcacaaaatgag 195  Q
    |||||||||||||||||||||||||||||||    
T  33210776 ggaaacttctacggtacactcacaaaatgag 33210746  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 2315755 - 2315791
Alignment:
Q  36 aattaagagtgtcaatttaaaattaccttaaacttaa 72  Q
    |||||||||||||||||||||||||| || |||||||    
T  2315755 aattaagagtgtcaatttaaaattacattgaacttaa 2315791  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 2642698 - 2642734
Alignment:
Q  36 aattaagagtgtcaatttaaaattaccttaaacttaa 72  Q
    |||||||||||||||||||||||| |||| |||||||    
T  2642698 aattaagagtgtcaatttaaaatttccttgaacttaa 2642734  T

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Target: chr8 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 33881208 - 33881132
Alignment:
Q  15 aatactcaaattaagtggttgaattaagagtgtcaatttaaaattaccttaaacttaaataagagatgaatgaacac 91  Q
    |||||||||||||| ||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  33881208 aatactcaaattaaatggttcaattaagaatgttaatttaaaattaccttgaacttaaataagagatgaatgaacac 33881132  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 989510 - 989546
Alignment:
Q  36 aattaagagtgtcaatttaaaattaccttaaacttaa 72  Q
    ||||||||||||||||||||||||||||| |||||||    
T  989510 aattaagagtgtcaatttaaaattaccttgaacttaa 989546  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 7839051 - 7839087
Alignment:
Q  36 aattaagagtgtcaatttaaaattaccttaaacttaa 72  Q
    |||||||||||| |||||||||||||||| |||||||    
T  7839051 aattaagagtgttaatttaaaattaccttgaacttaa 7839087  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 2034028 - 2034064
Alignment:
Q  36 aattaagagtgtcaatttaaaattaccttaaacttaa 72  Q
    ||||||||||||||||||||||||||||| |||||||    
T  2034028 aattaagagtgtcaatttaaaattaccttgaacttaa 2034064  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 50064878 - 50064842
Alignment:
Q  36 aattaagagtgtcaatttaaaattaccttaaacttaa 72  Q
    ||||||||||||||||||||||||||||| |||||||    
T  50064878 aattaagagtgtcaatttaaaattaccttgaacttaa 50064842  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 25537220 - 25537192
Alignment:
Q  36 aattaagagtgtcaatttaaaattacctt 64  Q
    |||||||||||||||||||||||||||||    
T  25537220 aattaagagtgtcaatttaaaattacctt 25537192  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 35126204 - 35126240
Alignment:
Q  36 aattaagagtgtcaatttaaaattaccttaaacttaa 72  Q
    ||||||||||||||||||||||||||||| |||||||    
T  35126204 aattaagagtgtcaatttaaaattaccttgaacttaa 35126240  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Complemental strand, 27045100 - 27045070
Alignment:
Q  165 ggaaacttctacggtacactcacaaaatgag 195  Q
    |||||||||||||||||||||||||||||||    
T  27045100 ggaaacttctacggtacactcacaaaatgag 27045070  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 36431935 - 36431901
Alignment:
Q  38 ttaagagtgtcaatttaaaattaccttaaacttaa 72  Q
    ||||||||||||||||||||||||||| |||||||    
T  36431935 ttaagagtgtcaatttaaaattaccttgaacttaa 36431901  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 41968432 - 41968462
Alignment:
Q  165 ggaaacttctacggtacactcacaaaatgag 195  Q
    |||||||||||||||||||||||||||||||    
T  41968432 ggaaacttctacggtacactcacaaaatgag 41968462  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 36754336 - 36754366
Alignment:
Q  165 ggaaacttctacggtacactcacaaaatgag 195  Q
    |||||||||||||||||||||||||||||||    
T  36754336 ggaaacttctacggtacactcacaaaatgag 36754366  T

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