View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_150 (Length: 209)
Name: NF1643_high_150
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_150 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 40288893 - 40288711
Alignment:
| Q |
9 |
gagtgagatgaaccacggtgagaaagcgaattaagcgcaacttcagcggcggagtgttcagcttgacggagagttgaacagtagtgaggactttcgaaga |
108 |
Q |
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| T |
40288893 |
gagtgagaaggaccacggtgagaaagcgaattaagcgcaacttcagcggcggagtgttcagcttgacggagagttgaacagtagtgaggactttcgaaga |
40288794 |
T |
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| Q |
109 |
tctcgccgttaaagttaacggtagctttaaacctcggcgcgtgatcaggaccttcacgaatgcaagtgtaagaaggaagattg |
191 |
Q |
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| T |
40288793 |
tctcgccgttaaagttaacggtagctttaaacctcggcgcgtgatcaggaccttcacgaatgcaagtgtaagaaggaagattg |
40288711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 21759841 - 21759962
Alignment:
| Q |
63 |
tgttcagcttgacggagagttgaacagtagtgaggactttcgaagatctcgccgttaaagttaacggtagctttaaacctcggcgcgtgatcaggacctt |
162 |
Q |
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| T |
21759841 |
tgttcagcttgacgaagtgttgtacagtactgaggactttcaaagatctcgccgttaaagttaacggtagctttaaaccgcggcgcgtgatcaggacctt |
21759940 |
T |
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| Q |
163 |
cacgaatgcaagtgtaagaagg |
184 |
Q |
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| T |
21759941 |
ctcttatgcacgtgtatgaagg |
21759962 |
T |
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