View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_16 (Length: 523)
Name: NF1643_high_16
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 480; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 6 - 505
Target Start/End: Complemental strand, 12253447 - 12252948
Alignment:
| Q |
6 |
aggagcacagaacttccaagaattatcttagtaatcaatccactttaaataatattttggagatggattatcaatatattcttggaggagagattcttgc |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12253447 |
aggaacacagaacttccaagaattatcttagtaatcaatccactttaaataatattttggagatggattatcaatatattcttggaggagagattcttgc |
12253348 |
T |
|
| Q |
106 |
ttgtagcttggcatttgtgtttgttctatacattgttgttgaaaagaagaaagccaaagaaatagattcaagctcaacatatctgaaaactaatggtcca |
205 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12253347 |
ttgtagcttggcatttgtgtttgctctatacattgttgttgaaaagaagaaagccaaagaaatagattcaagctcaacatatctgaaaactaatggtcca |
12253248 |
T |
|
| Q |
206 |
aaaaatggaacatgcagcagcttatttcaacaggttgctggaggtactgatatcatcattgtaggtgctggtgttgctggttctgctcttgcttacacac |
305 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12253247 |
aaaaatggaacatgcagcagcttatttcaacaggctgctggaggtactgatatcatcattgtaggtgctggtgttgctggttctgctcttgcttacacac |
12253148 |
T |
|
| Q |
306 |
ttggaaaggtagaatataacgagaccgttaattcatttcattcctcttgcattgttcttgcattgttcttgtttgttacaggatggacgacgagtgcatg |
405 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12253147 |
ttggaaaggtagaatataatgagaccattaattcatttcattcctcttgcattgttcttgcattgttcttgtttgttacaggatggacgacgagtgcatg |
12253048 |
T |
|
| Q |
406 |
tcattgaaagagatctgaatgagcctgataggattgtaggagaattgctacaacctggggggtatctaaagttgcttgagttgggtcttgagggtaagca |
505 |
Q |
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| T |
12253047 |
tcattgaaagagatctgaatgagcctgataggattgtaggagaattgctacaacctggggggtatctaaagttgcttgagttgggtcttgagggtaagca |
12252948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 63 - 348
Target Start/End: Original strand, 12399934 - 12400219
Alignment:
| Q |
63 |
tggagatggattatcaatatattcttggaggagagattcttgcttgtagcttggcatttgtgtttgttctatacattgttgttgaaaagaagaaagccaa |
162 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||||||| ||||||||||| | ||||||||||||| ||| |||| |
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| T |
12399934 |
tggagatgaattatcaatatattcttggaggagagtttcttgcttgtagttttgcatttgtgtatgttctatacactcttgttgaaaagaaaaaacccaa |
12400033 |
T |
|
| Q |
163 |
agaaatagattcaagctcaacatatctgaaaactaatggtccaaaaaatggaacatgcagcagcttatttcaacaggttgctggaggtactgatatcatc |
262 |
Q |
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| T |
12400034 |
agaaatagcttcaagctcaacatatctgaaaaccaatggtccaaaaaatggaatatgcagcagcttattgcaagaggctgcaggaggtactgatatcatc |
12400133 |
T |
|
| Q |
263 |
attgtaggtgctggtgttgctggttctgctcttgcttacacacttggaaaggtagaatataacgagaccgttaattcatttcattc |
348 |
Q |
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| T |
12400134 |
attgtaggtgctggagttgctggttctgctcttgcttacacacttggaaaggtagaatataacaagacctttatctcattccattc |
12400219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 361 - 502
Target Start/End: Original strand, 12402091 - 12402232
Alignment:
| Q |
361 |
tcttgcattgttcttgtttgttacaggatggacgacgagtgcatgtcattgaaagagatctgaatgagcctgataggattgtaggagaattgctacaacc |
460 |
Q |
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||||||||||||||||| |||| ||||||||| | |||||||||||||||||||| || ||| ||| |||||||||||||| |||||| |||||||||| |
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| T |
12402091 |
tcttgcattgttcttgtatgttgcaggatggaaggcgagtgcatgtcattgaaagggacttgagtgaacctgataggattgtgggagaactgctacaacc |
12402190 |
T |
|
| Q |
461 |
tggggggtatctaaagttgcttgagttgggtcttgagggtaa |
502 |
Q |
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|||||||||| | ||||| ||||||||||||||||||||||| |
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| T |
12402191 |
tggggggtatttgaagttacttgagttgggtcttgagggtaa |
12402232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 12396277 - 12396359
Alignment:
| Q |
6 |
aggagcacagaacttccaagaattat----cttagtaatcaatccactttaaataatattttggagatggattatcaatatat |
84 |
Q |
| |
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|||| ||||||||||||||||||||| |||| | |||| || ||||| ||| |||||||||||||| ||||||||||||| |
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| T |
12396277 |
aggaacacagaacttccaagaattattttacttattgatcattcaactttcaatgatattttggagatgaattatcaatatat |
12396359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 362 - 505
Target Start/End: Complemental strand, 36747924 - 36747781
Alignment:
| Q |
362 |
cttgcattgttcttgtttgttacaggatggacgacgagtgcatgtcattgaaagagatctgaatgagcctgataggattgtaggagaattgctacaacct |
461 |
Q |
| |
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|||| ||||| ||| |||||| ||||||||||| ||||| || || ||||||||||| | | |||||||||||| ||||| || |||||||| |||||| |
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| T |
36747924 |
cttggattgtgcttatttgttgcaggatggacggcgagtacacgtgattgaaagagacttaactgagcctgatagaattgtgggtgaattgcttcaacct |
36747825 |
T |
|
| Q |
462 |
ggggggtatctaaagttgcttgagttgggtcttgagggtaagca |
505 |
Q |
| |
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|| || ||||| ||||| |||||||| ||||||||||||||||| |
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| T |
36747824 |
ggtggctatctgaagttacttgagttaggtcttgagggtaagca |
36747781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 36748609 - 36748547
Alignment:
| Q |
254 |
gatatcatcattgtaggtgctggtgttgctggttctgctcttgcttacacacttggaaaggta |
316 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||| || ||||||||||||||| |
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| T |
36748609 |
gatatcatcattgtaggtgctggagttgctggtgctgctcttgcctatacacttggaaaggta |
36748547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 36748792 - 36748730
Alignment:
| Q |
65 |
gagatggattatcaatatattcttggaggagagattcttgcttgtagcttggcatttgtgtttgtt |
130 |
Q |
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| T |
36748792 |
gagatggattatcagtatattcttggagg---gattctggcttgtagtttggcatttgtgtttgtt |
36748730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 460
Target Start/End: Complemental strand, 4768468 - 4768393
Alignment:
| Q |
385 |
aggatggacgacgagtgcatgtcattgaaagagatctgaatgagcctgataggattgtaggagaattgctacaacc |
460 |
Q |
| |
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|||||||||| ||||||||| | |||||||||||| ||| ||||||||| || ||||| ||||| ||||||||||| |
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| T |
4768468 |
aggatggacgtcgagtgcatattattgaaagagatttgagtgagcctgacagaattgttggagagttgctacaacc |
4768393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 501
Target Start/End: Original strand, 47790271 - 47790387
Alignment:
| Q |
385 |
aggatggacgacgagtgcatgtcattgaaagagatctgaatgagcctgataggattgtaggagaattgctacaacctggggggtatctaaagttgcttga |
484 |
Q |
| |
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|||||||||||||||| | | | |||||||||||||||||||| || || | ||||| ||||| |||||||||||||| || ||||| || ||| |||| |
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| T |
47790271 |
aggatggacgacgagtacttattattgaaagagatctgaatgaaccagaccgaattgttggagagttgctacaacctggaggttatctcaaattgattga |
47790370 |
T |
|
| Q |
485 |
gttgggtcttgagggta |
501 |
Q |
| |
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|||| ||||| |||| |
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| T |
47790371 |
actgggacttgatggta |
47790387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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