View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643_high_17 (Length: 516)
Name: NF1643_high_17
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 11034540 - 11034042
Alignment:
| Q |
1 |
gatgttttatggatttgaactttcttggctcaacagtttttgtaaattagatgtttcatatgcgtatgcggagctcgatcaaaataaccaggctcactgt |
100 |
Q |
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| T |
11034540 |
gatgttttatggatttgaactttcttggctcaacagtttttgtaaattagatgtttcgtatgcgtatgcggagctcgatcaaaataaccaggctcactgt |
11034441 |
T |
|
| Q |
101 |
aattatggttggtatatatgcaattctgcgctttagatactctattttttcaagttggttgcttaattttcttttatttacaattacatcgatcttccac |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11034440 |
aattatggttggtatatatgcaattctgctctttagatactctattttttcaagttggttgcttaattttcttttatttacaattacatcgatcttccac |
11034341 |
T |
|
| Q |
201 |
acccatttgttagagtgagtgctactaattaacacttaatctgttactatgctttgtgtatgtccttgcagcttactggaataatgtggcttggatagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11034340 |
acccatttgttagagtgagtgctactaattaacactcaatctgttactatgctttgtgtatgtccttgcagcttactggaataatgtggcttggatagtt |
11034241 |
T |
|
| Q |
301 |
gcacgtttatcgagtcgcataggtaagcaagacataagacttaaaataaagtttagaaaacaaattttcagtacaaaaactatnnnnnnnncttgttctg |
400 |
Q |
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||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11034240 |
gcatgtttatcgagtcgcacaggtaagcaagacataagacttaaaataaagtttagaaaacaaattttcagtacaaaaactataaaaaaaacttgttctg |
11034141 |
T |
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| Q |
401 |
ttgttagtatgatgtcttttcttctaaaaaacttgtcaatagtaagtaatattgggcaatatttttcgcatgagttatttggttgcctacccatattctg |
500 |
Q |
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| T |
11034140 |
ttgttagtatgatgtcttttcttctaaaaaacttgtaaat----agtaatattgggcaatatttttcgcatgagttatttggttgcctacccatattctg |
11034045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 64 - 311
Target Start/End: Complemental strand, 11009085 - 11008834
Alignment:
| Q |
64 |
gtatgcggagctcgatcaaaataaccaggctcactgtaattatggttggtatatat--gcaattctgcgctttagatactctatttttt-caagttggtt |
160 |
Q |
| |
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|||||| | |||||||||| |||||||| |||||||||| |||||||||||||||| ||| || |||| |||| |||||||||||||| ||| || | | |
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| T |
11009085 |
gtatgcagtgctcgatcaatataaccagcctcactgtaaatatggttggtatatatatgcagttgtgcgatttatatactctatttttttcaatttcgat |
11008986 |
T |
|
| Q |
161 |
gcttaatttt-cttttatttacaattacatcgatcttccacacccatttgttagagtgagtgctactaattaacacttaatctgttactatgctttgtgt |
259 |
Q |
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|||||||||| || ||||||||||| | | ||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||| |||||||||| ||| |
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| T |
11008985 |
gcttaatttttctattatttacaatcgcgtggatcttccacatccatttgttagagtgagtgctactaaataacactcaatatgtcactatgctttatgt |
11008886 |
T |
|
| Q |
260 |
atgtccttgcagcttactggaataatgtggcttggatagttgcacgtttatc |
311 |
Q |
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|| ||||||| |||||||||||| | |||||||||||||||||||||||| |
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| T |
11008885 |
ttgctcttgcagattactggaataacgcggcttggatagttgcacgtttatc |
11008834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 10921669 - 10921628
Alignment:
| Q |
5 |
ttttatggatttgaactttcttggctcaacagtttttgtaaa |
46 |
Q |
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| T |
10921669 |
ttttatggatttgaactttcttggctcaacagtttttgtaaa |
10921628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11003379 - 11003424
Alignment:
| Q |
1 |
gatgttttatggatttgaactttcttggctcaacagtttttgtaaa |
46 |
Q |
| |
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|||||||||||||||||||||||| |||||||| ||| |||||||| |
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| T |
11003379 |
gatgttttatggatttgaactttcatggctcaatagtctttgtaaa |
11003424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11009139 - 11009103
Alignment:
| Q |
1 |
gatgttttatggatttgaactttcttggctcaacagt |
37 |
Q |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
11009139 |
gatgtattatggatttgaactttcttggctcaacagt |
11009103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11000399 - 11000444
Alignment:
| Q |
1 |
gatgttttatggatttgaactttcttggctcaacagtttttgtaaa |
46 |
Q |
| |
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|||||||||||||||||||||||| |||||||| || |||||||| |
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| T |
11000399 |
gatgttttatggatttgaactttcatggctcaatagcctttgtaaa |
11000444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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