View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643_high_20 (Length: 479)

Name: NF1643_high_20
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643_high_20
NF1643_high_20
[»] chr5 (7 HSPs)
chr5 (1-225)||(43240519-43240743)
chr5 (245-456)||(43239716-43239927)
chr5 (1-160)||(38927821-38927979)
chr5 (153-224)||(38928005-38928075)
chr5 (302-373)||(43246527-43246598)
chr5 (302-373)||(43252992-43253063)
chr5 (72-141)||(21115189-21115258)
[»] chr7 (2 HSPs)
chr7 (1-160)||(3570878-3571036)
chr7 (153-224)||(3571062-3571132)
[»] chr1 (2 HSPs)
chr1 (1-146)||(46354247-46354391)
chr1 (153-224)||(46354434-46354505)
[»] scaffold0039 (1 HSPs)
scaffold0039 (59-151)||(80963-81059)
[»] chr8 (1 HSPs)
chr8 (72-141)||(43651982-43652051)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 43240743 - 43240519
Alignment:
Q  1 aattccgcaagtataattagatgttgcacccaccaagtttatagtggcaataaaactcagaagtatattttgagtactattagttttacaattttcctac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43240743 aattccgcaagtataattagatgttgcacccaccaagtttatagtggcaataatactcagaagtatattttgagtactattagttttacaattttcctac 43240644  T
Q  101 ccaataattatcgtagtaaaactttactttatgattatcaattaaacttcagaaagtgcaaggcatttgtggttagtaactgatgaaagtccttttcatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43240643 ccaataattatcgtagtaaaactttactttatgattatcaattaaacttcagaaagtgcaaggcatttgtggttagtaactgatgaaagtccttttcatt 43240544  T
Q  201 acgcaaaaaatagcaaattgaaagt 225  Q
    |||||||||||| ||||||||||||    
T  43240543 acgcaaaaaataacaaattgaaagt 43240519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 245 - 456
Target Start/End: Complemental strand, 43239927 - 43239716
Alignment:
Q  245 atagatatagattatagataatactacaacaaaagaatgaaagaaggnnnnnnnnnn-gcaacaaaaattgcctcgcacattattcgttatggtttcgct 343  Q
    |||| |||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||    
T  43239927 atagttatagattatagataatactacaacaaaagaatgaaagaagaaaaaaaaaagagcaacaaaaattgcctcgcacattattcgttatggtttcgct 43239828  T
Q  344 gtaaaagaattggcttgatatagcgccttcctcnnnnnnnnnnnnnnnngaataatgatatatgtcccgaagttttttatcccgaccaattcaaacccgt 443  Q
     |||||||||||||||||||||||||||||||                 |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43239827 ttaaaagaattggcttgatatagcgccttcct-ttttctttctttttttgaataatgatatatgttccgaagttttttatcccgaccaattcaaacccgt 43239729  T
Q  444 ataaaataacatg 456  Q
    |||||||||||||    
T  43239728 ataaaataacatg 43239716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 38927821 - 38927979
Alignment:
Q  1 aattccgcaagtataattagatgttgcacccaccaagtttatagtggcaataaaactc--agaagtatattttgagtactattagttttacaattttcct 98  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||| ||  |||||||||||| ||||||||||||||||||| ||||| |    
T  38927821 aattctgcaagtataattagatattgcacacaccaagtttatagtggcaatgaaattcatagaagtatatttggagtactattagttttacatttttctt 38927920  T
Q  99 acccaataattatcgtagtaaaactttactttatgattatcaattaaacttcagaaagtgca 160  Q
    ||||||||   | ||||| | ||||| ||||||||||||| ||||||| |||  ||||||||    
T  38927921 acccaata---accgtagcagaacttaactttatgattatgaattaaaattccaaaagtgca 38927979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 38928005 - 38928075
Alignment:
Q  153 aaagtgcaaggcatttgtggttagtaactgatgaaagtccttttcattacgcaaaaaatagcaaattgaaag 224  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  38928005 aaagtgcaaggcatttgtggtg-gtaactgatgaaagtccttttcattacataaaaaatagcaaattgaaag 38928075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 373
Target Start/End: Complemental strand, 43246598 - 43246527
Alignment:
Q  302 gcaacaaaaattgcctcgcacattattcgttatggtttcgctgtaaaagaattggcttgatatagcgccttc 373  Q
    |||||||||||| |||| ||||||||||| |||||||||  ||||||||||| || |||||||||| |||||    
T  43246598 gcaacaaaaatttcctcacacattattcgctatggtttcattgtaaaagaatcgggttgatatagcaccttc 43246527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 373
Target Start/End: Complemental strand, 43253063 - 43252992
Alignment:
Q  302 gcaacaaaaattgcctcgcacattattcgttatggtttcgctgtaaaagaattggcttgatatagcgccttc 373  Q
    |||||||||||| |||| ||||||||||| |||||||||  ||||||||||| || |||||||||| |||||    
T  43253063 gcaacaaaaatttcctcacacattattcgctatggtttcattgtaaaagaatcgggttgatatagcaccttc 43252992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 21115189 - 21115258
Alignment:
Q  72 gagtactattagttttacaattttcctacccaataattatcgtagtaaaactttactttatgattatcaa 141  Q
    ||||||||||||||||||| |||||  ||||||| ||||||  |  |||| ||| |||||||||||||||    
T  21115189 gagtactattagttttacatttttctcacccaatcattatcacaacaaaaattttctttatgattatcaa 21115258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 3570878 - 3571036
Alignment:
Q  1 aattccgcaagtataattagatgttgcacccaccaagtttatagtggcaataaaactc--agaagtatattttgagtactattagttttacaattttcct 98  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||| ||  |||||||||||| ||||||||||||||||||| ||||| |    
T  3570878 aattctgcaagtataattagatattgcacacaccaagtttatagtggcaatgaaattcatagaagtatatttggagtactattagttttacatttttctt 3570977  T
Q  99 acccaataattatcgtagtaaaactttactttatgattatcaattaaacttcagaaagtgca 160  Q
    ||||||||   | ||||| | ||||| ||||||||||||| ||||||| |||  ||||||||    
T  3570978 acccaata---accgtagcagaacttaactttatgattatgaattaaaattccaaaagtgca 3571036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 3571062 - 3571132
Alignment:
Q  153 aaagtgcaaggcatttgtggttagtaactgatgaaagtccttttcattacgcaaaaaatagcaaattgaaag 224  Q
    |||||||||||||||||||||  |||| ||||||||||||||||||||||  ||||||||||||||||||||    
T  3571062 aaagtgcaaggcatttgtggtg-gtaattgatgaaagtccttttcattacataaaaaatagcaaattgaaag 3571132  T

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Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 46354247 - 46354391
Alignment:
Q  1 aattccgcaagtataattagatgttgcacccaccaagtttatagtggcaataaaactc--agaagtatattttgagtactattagttttacaattttcct 98  Q
    ||||| |||||||||||||||| |||||| |||||| |||||||||||||||||| ||  ||||||||||||  |||||||||||||||||| ||||| |    
T  46354247 aattctgcaagtataattagatattgcacacaccaaatttatagtggcaataaaattcatagaagtatatttgaagtactattagttttacatttttctt 46354346  T
Q  99 acccaataattatcgtagtaaaactttactttatgattatcaattaaa 146  Q
    ||||||||   | ||||| | ||||| |||||||||||||||||||||    
T  46354347 acccaata---accgtagcagaacttaactttatgattatcaattaaa 46354391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 46354434 - 46354505
Alignment:
Q  153 aaagtgcaaggcatttgtggttagtaactgatgaaagtccttttcattacgcaaaaaatagcaaattgaaag 224  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  46354434 aaagtgcaaggcatttgtggttggtaactgatggaagtccttttcattacgtaaaaaatagcaaattgaaag 46354505  T

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Target: scaffold0039 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 81059 - 80963
Alignment:
Q  59 agaagtatattttgagtactattagttttacaattttcctacccaa----taattatcgtagtaaaactttactttatgattatcaattaaacttca 151  Q
    |||||||||| | |||||||||||||||||||||||||  ||||||    ||||||||  | |||||||||||||||||||||||||| || |||||    
T  81059 agaagtatatatggagtactattagttttacaattttctcacccaatcattaattatcacattaaaactttactttatgattatcaataaaccttca 80963  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 43651982 - 43652051
Alignment:
Q  72 gagtactattagttttacaattttcctacccaataattatcgtagtaaaactttactttatgattatcaa 141  Q
    ||||||||||||||||||| |||||  ||||||| ||||||  |  |||| ||| |||||||||||||||    
T  43651982 gagtactattagttttacatttttctcacccaatcattatcacaacaaaaatttcctttatgattatcaa 43652051  T

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